Hi, I have seen similar errors when trying to build in a nfs share. I would suggest you try to do "eb --buildpath=/path/to/some/local/disk" and check if this workarounds the problem.
regards, Pablo. 2018-02-21 9:33 GMT+01:00 Philippart Raphaël <[email protected]>: > Hello, > > I have a problem with the compilation of R-3.4.3 with the > eb R-3.4.3-foss-2017b-X11-20171023.eb > > I have this error with the command eb --modules-tool EnvironmentModulesC > --module-syntax Tcl --ignore-checksums R-3.4.3-foss-2017b-X11-20171023.eb > --debug --robot > > == FAILED: Installation ended unsuccessfully (build > directory: > /cm/shared/apps/easyb/.local/easybuild/build/Perl/5.26.0/GCCcore-6.4.0): > build failed (first 300 chars): Failed to remove path > /cm/shared/apps/easyb/.local/easybuild/build/Perl/5.26.0/GCCcore-6.4.0 > with shutil.rmtree, even after 3 attempts. > == Results of the build can be found in the log file(s) > /tmp/eb-BUjouG/easybuild-Perl-5.26.0-20180221.091909.usKKL.log > ERROR: Build of /usr/lib/python2.7/site-packages/easybuild_ > easyconfigs-3.5.1-py2.7.egg/easybuild/easyconfigs/p/Perl/Perl-5.26.0-GCCcore-6.4.0.eb > failed (err: 'build failed (first 300 chars): Failed to remove path > /cm/shared/apps/easyb/.local/easybuild/build/Perl/5.26.0/GCCcore-6.4.0 > with shutil.rmtree, even after 3 attempts.’) > > Here is the folder with the error. > > [email protected] ~ $ ll -d /cm/shared/apps/easyb/.local/ > easybuild/build/Perl/5.26.0/GCCcore-6.4.0 > drwxr-xr-x 229 easyb wheel 8192 Feb 20 15:51 /cm/shared/apps/easyb/. > local/easybuild/build/Perl/5.26.0/GCCcore-6.4.0 > > I tried to remove the folder and retried the installation without success, > same error. > > I saw for this error, this information in the GitHub > > https://github.com/easybuilders/easybuild-framework/pull/1722/commits/ > d13062bca79f994aeadba05b6a8b96ac0f3a2ef8 > > But It’s an information of 2016 and the modification in the file tools.py > is well done. > > [email protected] ~ $ eb --version > This is EasyBuild 3.5.1 (framework: 3.5.1, easyblocks: 3.5.1) on host > master01. > > What can I do for it pls ? > > Best regards > > > Raphaël Philippart > Opérations : Systèmes > SeGI - ULiège > Allée de la Découverte, 8 > Quartier Polytech 1 - Bâtiment B26 > 4000 Liège > Phone +32-4-366 4981 <+32%204%20366%2049%2081> > Fax +32-4-366 2920 <+32%204%20366%2029%2020> > Email [email protected] <[email protected]> > > > > > -- Pablo Escobar López HPC systems engineer sciCORE, University of Basel SIB Swiss Institute of Bioinformatics http://scicore.unibas.ch
