Howdy John,

You might consider posting the EasyConfig.eb.  Not sure if that
is a simple syntax error or not.

jack


On 04/16/2018 01:26 PM, Dey, John F wrote:

EasyBuild error.  Package seems to build and test ok.  Easybuild fails during package install

Easyconfig: https://github.com/FredHutch/easybuild-life-sciences <https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_FredHutch_easybuild-2Dlife-2Dsciences&d=DwMGaQ&c=ODFT-G5SujMiGrKuoJJjVg&r=yuyoBkmTkIQPbv1BTF9U27ww5Lm7GhsMmWcQG9gmjbA&m=WwlUWCc_i-LAzQ6vTCIJYysmTrXHevzH0havJDZ8vzQ&s=b_gW9oXTBVyAd0hahwiIrWLHFVeNscy9B_SG2EstxYY&e=>    -> fh_easyconfigs -> NiftyNet-0.2.2-foss-2016b-Python-3.6.5-fh1.eb

EasyBuild Version : This is EasyBuild 3.5.3 (framework: 3.5.3, easyblocks: 3.5.3)

== 2018-04-16 11:12:49,498 easyblock.py:2449 INFO Starting build step

== 2018-04-16 11:12:49,499 easyblock.py:2455 INFO Running method build_step part of step build

== 2018-04-16 11:12:49,499 build_log.py:233 INFO testing...

== 2018-04-16 11:12:49,500 easyblock.py:2449 INFO Starting test step

== 2018-04-16 11:12:49,500 easyblock.py:2455 INFO Running method test_step part of step test

== 2018-04-16 11:12:49,501 build_log.py:233 INFO installing...

== 2018-04-16 11:12:49,501 easyblock.py:2449 INFO Starting install step

== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method stage_install_step part of step install

== 2018-04-16 11:12:49,502 easyblock.py:2455 INFO Running method make_installdir part of step install

== 2018-04-16 11:12:49,502 easyblock.py:881 INFO Found old directory /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1

== 2018-04-16 11:12:49,543 filetools.py:1203 INFO Path /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1 successfully removed.

== 2018-04-16 11:12:49,543 easyblock.py:888 INFO Removed old directory /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1

== 2018-04-16 11:12:49,544 filetools.py:1107 INFO Creating directory /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1 (parents: True, set_gid: False, sticky: False)

== 2018-04-16 11:12:49,545 easyblock.py:2455 INFO Running method install_step part of step install

== 2018-04-16 11:12:49,546 filetools.py:1107 INFO Creating directory /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages (parents: True, set_gid: False, sticky: False)

== 2018-04-16 11:12:49,549 environment.py:97 INFO Environment variable PYTHONPATH set to /home/jfdey/.local/easybuild/software/NiftyNet/0.2.2-foss-2016b-Python-3.6.5-fh1/lib/python3.6/site-packages (previously undefined)

== 2018-04-16 11:12:49,549 run.py:183 INFO running cmd: pip --version

== 2018-04-16 11:12:54,427 pythonpackage.py:331 INFO Found pip version 10.0.0, OK

== 2018-04-16 11:12:54,592 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): Traceback (most recent call last):

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py", line 128, in build_and_install_software

(ec_res['success'], app_log, err) = build_and_install_one(ec, init_env, hooks=hooks)

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py", line 2684, in build_and_install_one

    result = app.run_all_steps(run_test_cases=run_test_cases)

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py", line 2600, in run_all_steps

self.run_step(step_name, step_methods)

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/framework/easyblock.py", line 2475, in run_step

step_method(self)()

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py", line 480, in install_step

    cmd = self.compose_install_command(self.installdir)

  File "/app/easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_easyblocks-3.5.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.py", line 352, in compose_install_command

    loc = self.src[0]['path']

IndexError: list index out of range

(at easybuild/software/EasyBuild/3.5.3/lib/python2.7/site-packages/easybuild_framework-3.5.3-py2.7.egg/easybuild/main.py:161 in build_and_install_software)

-- **

*John Dey*

*HPC Operations*

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*E* jf...@fredhutch.org <mailto:jf...@fredhutch.org>


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