Hi Jakob,
On 21/11/2018 11:01, Jakob Schiøtz wrote:
On 21 Nov 2018, at 10:52, Kenneth Hoste <[email protected]> wrote:
Hi Jakob,
Updates were made to the Bundle easyblock together with the changes to the
PythonBundle easyblock, it seems like you are missing the former somehow.
Can you check where the Bundle easyblock is being imported from? Most likely
it's picking up the one from the 3.7.1 installation...
python -O -c "import easybuild.easyblocks.generic.bundle; print
easybuild.easyblocks.generic.bundle.__file__”
/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_easyblocks-3.7.1-py2.7.egg/easybuild/easyblocks/generic/bundle.pyo
So yes, it comes from the installed version.
How did you make the updated easyblocks available to your EasyBuild
installation?
I prepend /home/niflheim/schiotz/development/easybuild-easyblocks to PYTHONPATH
after loading the eb module. Maybe that is not the correct way to do it?
The problem with this approach is that some setuptools magic kicks in,
causing the easyblocks installed in your EasyBuild 3.7.1 installation to
have preference.
This doesn't happen for PythonBundle, because that's not included with
EasyBuild 3.8.0 yet...
Try configuring EasyBuild to pick up the easyblocks in the develop
checkout instead, as follows:
export
EASYBUILD_INCLUDE_EASYBLOCKS='/home/niflheim/schiotz/development/easybuild-easyblocks/easybuild/easyblocks/*/*.py'
(the single quotes are important, you should pass those literally to
EasyBuild, not let bash expand them)
See also
https://easybuild.readthedocs.io/en/latest/Including_additional_Python_modules.html#including-additional-easyblocks-include-easyblocks
for more information.
Let me know if that does the trick...
regards,
Kenneth
Jakob
regards,
Kenneth
On 21/11/2018 10:38, Jakob Schiøtz wrote:
Dear all,
I just git-pulled the develop branch for easybuild-easyblocks and
easybuild-easyconfigs. Now I cannot install PythonBundles:
$ eb ASE-3.16.2-foss-2018b-Python-3.6.6.eb -r
== temporary log file in case of crash /tmp/eb-y2cx_F/easybuild-alpx3U.log
Traceback (most recent call last):
File "/usr/lib64/python2.7/runpy.py", line 162, in _run_module_as_main
"__main__", fname, loader, pkg_name)
File "/usr/lib64/python2.7/runpy.py", line 72, in _run_code
exec code in run_globals
File
"/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_framework-3.7.1-py2.7.egg/easybuild/main.py",
line 529, in <module>
main()
File
"/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_framework-3.7.1-py2.7.egg/easybuild/main.py",
line 396, in main
easyconfigs, generated_ecs = parse_easyconfigs(paths, validate=not
options.inject_checksums)
File
"/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_framework-3.7.1-py2.7.egg/easybuild/framework/easyconfig/tools.py",
line 387, in parse_easyconfigs
easyconfigs.extend(process_easyconfig(ec_file, **kwargs))
File
"/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_framework-3.7.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py",
line 1347, in process_easyconfig
ec = EasyConfig(spec, build_specs=build_specs, validate=validate,
hidden=hidden)
File
"/home/modules/software/EasyBuild/3.7.1/lib/python2.7/site-packages/easybuild_framework-3.7.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py",
line 356, in __init__
self.extra_options = easyblock_class.extra_options()
File
"/home/niflheim/schiotz/development/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py",
line 47, in extra_options
extra_vars = Bundle.extra_options(extra_vars)
TypeError: extra_options() takes no arguments (1 given)
Was it an error pulling easybuild-easyblocks? Is there an update that only
works with the next release of EasyBuild? Or is this a bug?
Best regards
Jakob
--
Jakob Schiøtz, professor, Ph.D.
Department of Physics
Technical University of Denmark
DK-2800 Kongens Lyngby, Denmark
http://www.fysik.dtu.dk/~schiotz/
--
Jakob Schiøtz, professor, Ph.D.
Department of Physics
Technical University of Denmark
DK-2800 Kongens Lyngby, Denmark
http://www.fysik.dtu.dk/~schiotz/
