Just to expand on what Jack wrote; these errors comes from trying to link code from a very new compiler with the (old) system ld.
EasyConfigs have both build-dependencies, and (runtime) dependencies. When you load the module normally, you only get the latter. binutils is such a build-dep, but there are others as well (but probably nothing that specifically affects pycurl). Rather than using pip install directly, I would recommend you either 1. Create a new EasyConfig, and install it separately (using the PythonPackage easyblock) 2. Copy Python-2.7.15-GCCcore-8.2.0.eb, add pycurl to the list of extensions, and do a eb Python-2.7.15-GCCcore-8.2.0.eb --skip --rebuild (and then submit your work as a pull request on github) Best regards, Mikael On Fri, Jul 19, 2019 at 7:27 PM Alastair Neil <[email protected]> wrote: > Hi > > I am new to easybuild. I just installed version 3.9.3 on a centos > 7.6.1810 system. I first built the foss 2019a toolchain using: > > > eb foss-2019a.eb -r >> > > This completed with mo obvious issues. I then built python 2.7.15 using: > > > eb Python-2.7.15-GCCcore-8.2.0.eb -r >> > > This too seemed to complete without issue. > > I then tried to install a module using pip: > > > module load Python/2.7.15-GCCcore-8.2.0 >> > pip -v install pycurl >> > > this dies with: > > Command >> "/opt/apps/easybuild/software/Python/2.7.15-GCCcore-8.2.0/bin/python -u -c >> "import setuptools, >> tokenize;__file__='/tmp/pip-install-mX9yps/pycurl/setup.py';f=getattr(tokenize, >> 'open', open)(__file__);code=f.read().replace('\r\n', >> '\n');f.close();exec(compile(code, __file__, 'exec'))" --with-openssl >> install --record /tmp/pip-record-Ui6qsC/install-record.txt >> --single-version-externally-managed --compile" failed with error code 1 in >> /tmp/pip-install-mX9yps/pycurl/ >> > > The issue seems to be an assembler error: > > gcc -fno-strict-aliasing -O2 -ftree-vectorize -march=native >> -fno-math-errno -fPIC -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes >> -fPIC -DPYCURL_VERSION="7.43.0.3" -DHAVE >> _CURL_SSL=1 -DHAVE_CURL_OPENSSL=1 -DHAVE_CURL_SSL=1 -DHAVE_CURL_OPENSSL=1 >> -DHAVE_CURL_SSL=1 >> -I/opt/apps/easybuild/software/Python/2.7.15-GCCcore-8.2.0/include/python2.7 >> -c src/ >> easy.c -o build/temp.linux-x86_64-2.7/src/easy.o >> /tmp/ccOJ03YM.s: Assembler messages: >> /tmp/ccOJ03YM.s:15: Error: unknown .loc sub-directive `view' >> /tmp/ccOJ03YM.s:15: Error: junk at end of line, first unrecognized >> character is `-' >> /tmp/ccOJ03YM.s:17: Error: unknown .loc sub-directive `view' >> /tmp/ccOJ03YM.s:17: Error: unknown pseudo-op: `.lvu1' >> /tmp/ccOJ03YM.s:20: Error: unknown .loc sub-directive `view' >> /tmp/ccOJ03YM.s:20: Error: unknown pseudo-op: `.lvu2' >> /tmp/ccOJ03YM.s:23: Error: unknown .loc sub-directive `view' >> /tmp/ccOJ03YM.s:23: Error: unknown pseudo-op: `.lvu3' >> > .... many more similar lines deleted.... >> > > any pointers welcome as to how to resolve this. > > --Thanks > > Alastair > > > > >
