[easybuild] Creating a config file within easyconfig?

[Loris Bennett]

Hi,

I'm trying to write an easyconfig for IOGA

  https://github.com/holmrenser/IOGA

The setup script creates a python dictionary and dumps this as a json
file.  In my EC I have this 


  # Write configuration file
  import os
  import json
  config = {}
  config['adapters'] = os.path.abspath('%(bbmaproot)s/alladapters.fa.gz')

  with open('IOGA_config.json','w') as fh:
        json.dump(config,fh,indent=1)

  files_to_copy = ['IOGA.py', 'IOGA_config.json', 'chloroplast.reference.fasta',
                   'plant_mitochondria.reference.fasta']

  sanity_check_paths = {
       'files': ["IOGA.py", "IOGA_config.json" ],
       'dirs': [''],
  }

but the file IOGA_config.json isn't created and I can't see from the log
file why not.

Any ideas?

Cheers,

Loris

-- 
Dr. Loris Bennett (Mr.)
ZEDAT, Freie Universität Berlin         Email loris.benn...@fu-berlin.de