Hi Åke, Ah, thanks for the information. The change must have happened post 3.2.6, as I have a working easyconfig for that version.
I would in fact be happy to install an older version, but an apparently bumpy transition from Sourceforge to Github seems to have broken all the archived source packages :-( Cheers, Loris Åke Sandgren <[email protected]> writes: > You're not doing anything wrong, but since MrBayes changed layout > between some 3.2 version and 3.2.7 the easyblock need to be updated. > > (Don't have time to look at this myself) > > On 8/27/19 1:23 PM, Loris Bennett wrote: >> Hi, >> >> With EasyBuild 3.9.4 and the following easyconfig: >> >> name = 'MrBayes' >> version = '3.2.7' >> >> homepage = 'http://nbisweden.github.io' >> description = "MrBayes is a program for the Bayesian estimation of >> phylogeny." >> >> toolchain = {'name': 'foss', 'version': '2018b'} >> toolchainopts = {'usempi': True} >> >> source_urls = ['https://github.com/NBISweden/MrBayes/archive'] >> sources = ['v%(version)s.tar.gz'] >> >> dependencies = [ >> ('beagle-lib', '3.0.2'), >> ('libreadline', '7.0'), >> ] >> >> builddependencies = [ >> ('Autotools', '20180311'), >> ] >> >> moduleclass = 'bio' >> >> I have the following error for a >> >> == 2019-08-27 13:12:36,748 run.py:173 DEBUG run_cmd: running cmd autoconf >> (in >> /trinity/shared/easybuild/build/MrBayes/3.2.7/foss-2018b/MrBayes-3.2.7/src) >> == 2019-08-27 13:12:36,748 run.py:192 INFO running cmd: autoconf >> == 2019-08-27 13:12:36,960 build_log.py:163 ERROR EasyBuild crashed with an >> error (at >> easybuild/software/EasyBuild/3.9.4/lib/python2.7/site-packages/vsc_base-2.8.4-py2.7.egg/vsc/utils/exceptions.py:124 >> in __init__): cmd "autoconf" exited with exit code 1 and output: >> autoconf: error: no input file >> >> As the unpacked tarball has the structure >> >> /trinity/shared/easybuild/build/MrBayes/3.2.7/foss-2018b/MrBayes-3.2.7/ >> ├── aclocal.m4 >> ├── am-aux >> ├── am-macros >> ├── configure >> ├── configure.ac >> ├── COPYING >> ├── doc >> ├── examples >> ├── INSTALL >> ├── Makefile.am >> ├── Makefile.in >> ├── NEWS >> ├── README >> ├── src >> └── TODO >> >> autoconf should be run in .../MrBayes-3.2.7, rather than >> .../MrBayes-3.2.7/src >> >> What am I doing wrong? >> >> Cheers, >> >> Loris >> -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
