Dear John Dey,
Maybe my custom R-3.6.0-foss-2019a may interest you.
It has been well tested on a Centos7 system, based on the standard
R-3.6.0-foss-2019a.
It contains 67 new packages. I used these dependencies:
dependencies = [
('R', '3.6.0'),
('GEOS', '3.7.2', '-Python-3.7.2'),
('GDAL', '3.0.0', '-Python-3.7.2'),
]
And the packages are (as usual, order is important):
exts_list = [
('rgdal', '1.4-4'),
('gdalUtils', '2.0.1.14'),
('ncdf4', '1.16.1'),
('gdtools', '0.1.9'),
('leaflet', '2.0.2'),
('satellite', '1.0.1'),
('sf', '0.7-7'),
('svglite', '1.2.2'),
('leafem', '0.0.1'),
('leafpop', '0.0.1'),
('mapview', '2.7.0'),
('MuMIn', '1.43.6'),
('gstat', '2.0-2'),
('RNetCDF', '1.9-1'),
('automap', '1.0-14'),
('clhs', '0.7-2'),
('rasterVis', '0.45'),
('reporttools', '1.1.2'),
('rgeos', '0.4-3'),
('RandomFieldsUtils', '0.5.3'),
('RandomFields', '3.3.6'),
('rworldmap', '1.3-6'),
('rworldxtra', '1.01'),
('colorRamps', '2.3'),
('mapdata', '2.3.0'),
('mapproj', '1.2.6'),
('RPostgreSQL', '0.6-2'),
('getPass', '0.2-2'),
('stringdist', '0.9.5.2'),
('here', '0.1'),
('svMisc', '1.1.0'),
('networkD3', '0.4'),
('cmsaf', '1.9.5'),
('treemap', '2.4-2'),
('RPostgres', '1.1.1'),
('nzelect', '0.4.0'),
('wordcloud', '2.6'),
('ngram', '3.0.4'),
('rtweet', '0.6.9'),
('lettercase', '0.13.1'),
('xgboost', '0.90.0.2'),
('rts', '1.0-49'),
('RgoogleMaps', '1.4.4'),
('ggmap', '3.0.0'),
('packrat','0.5.0'),
('rsconnect', '0.8.13'),
('rpostgis', '1.4.2'),
('aws.signature', '0.5.2'),
('aws.s3', '0.3.12'),
('geosphere', '1.5-10'),
('fuzzyjoin', '0.1.4'),
('refinr', '0.3.1'),
('x13binary', '1.1.39-2'),
('seasonal', '1.7.0'),
('mitools', '2.4'),
('survey', '3.36'),
('hts','5.1.5'),
('thief', '0.3'),
('forecastHybrid', '4.2.17'),
('ggseas', '0.5.4'),
('sysfonts', '0.8'),
('showtextdb', '2.0'),
('showtext', '0.7'),
('BiocManager', '1.30.4'),
('rvcheck', '0.1.5'),
('scatterpie', '0.1.3'),
('velox', '0.2.0'),
]
Best regards,
Pierre-Yves Barriat
Begin forwarded message:
From: "Dey, John F" <[email protected]<mailto:[email protected]>>
Subject: [easybuild] preparing R-3.6.1-foss-2019b
Date: 1 October 2019 at 00:27:53 GMT+2
To: "[email protected]<mailto:[email protected]>"
<[email protected]<mailto:[email protected]>>
Reply-To: [email protected]<mailto:[email protected]>
R-3.6.1 is a work in progress. Starting from 3.6.0-foss-2019a EasyUpdate has
found 155 updates and 6 new packages. Are there any open requests to add
libraries to R? I notice that Rstan has become it own EB. Rstan is very popular
and seems like it should be part of the basic R? Any comments?
linprog : 0.9-2 from geometry (add) [720, 18]
geometry : 0.4.1 -> 0.4.4 (update) [720, 19]
lifecycle : 0.1.0 from tidyr (add) [720, 155]
tidyr : 0.8.3 -> 1.0.0 (update) [720, 156]
jsonlite : 1.6 from httr (add) [720, 228]
sys : 3.3 from askpass (add) [720, 229]
(reordering)
askpass : 1.1 from openssl (add) [720, 230] …
openssl : 1.4.1 from httr (add) [720, 231] …
httr : 1.4.1 from cgdsr (add) [720, 232] …
cgdsr : 1.2.10 -> 1.3.0 (update) [720, 233]
rex : 1.1.2 from covr (add) [720, 477]
covr : 3.3.1 from devtools (add) [720, 478]
DT : 0.9 from devtools (add) [720, 479]
devtools : 2.0.2 -> 2.2.1 (update) [720, 480]
mvnfast : 0.2.5 from bridgesampling (add) [720, 605]
bridgesampling : 0.6-0 -> 0.7-2 (update) [720, 606]
tidygraph : 1.1.2 from ggraph (add) [720, 653]
graphlayouts : 0.5.0 from ggraph (add) [720, 654]
ggraph : 1.0.2 -> 2.0.0 (update) [720, 655]
John Dey
HPC Operations
Scientific Computing
O 206.667.4308<tel:(206)%20667-4308>
M 360.649.2731<tel:(360)%20649-2731>
E [email protected]<mailto:[email protected]>
[signature_1262957486]
Fred Hutchinson Cancer Research Center
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--
Pierre-Yves Barriat
Université catholique de Louvain
Earth and Life Institute (ELI)
Georges Lemaître Centre for Earth and Climate Research (TECLIM)
Place Louis Pasteur 3, SC10 - L4.03.08
BE-1348 Louvain-la-Neuve
Tel : +32-10.47.33.02
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