Hi Åke, Åke Sandgren <[email protected]> writes:
> You might need to add it to the configopts (preconfigopts). Not sure > which steps that easyconfig/block is going through. I have tried tweaking the EC directly with preconfigopts = 'CXXFLAGS="$CXXFLAGS -DSTAN_THREADS" ' but this doesn't help. In the log I see == 2019-11-27 10:01:00,566 easyconfig.py:583 INFO setting easyconfig parameter preconfigopts: value CXXFLAGS="$CXXFLAGS -DSTAN_THREADS" (type: <type 'str'>) but subsequently == 2019-11-27 10:01:01,750 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) A heavy-handed approach would seem to be redefining the default value of CXXFLAGS global. Is that possible? Otherwise it looks like I'll have to patch the Makefiles in the sources. Cheers, Loris > On 11/21/19 10:05 AM, Loris Bennett wrote: >> Loris Bennett <[email protected]> writes: >> >>> Hi, >>> >>> I am trying to install >>> >>> RStan-2.18.2-foss-2018b-R-3.5.1.eb >>> >>> with the additional compiler flag: >>> >>> -DSTAN_THREADS >>> >>> I want to us a hook and tried >>> >>> def pre_configure_hook(self, *args, **kwargs): >>> >>> """Pre-build hook""" >>> >>> # Build RStan with threading >>> ################################################## >>> if self.name == 'RStan': >>> self.cfg['buildopts'] = self.cfg['buildopts'] \ >>> + 'CXXFLAGS="$CXXFLAGS -DSTAN_THREADS"' >>> self.log.info("[pre-build hook] Added -DSTAN_THREADS to CXXFLAGS >>> to buildopts") >>> return >>> >>> In the log file I can see that the hooks is called, but the flag >>> doesn't seem to be used. >>> >>> What am I doing wrong? >> >> I have also tried adding >> >> buildopts = "-DSTAN_THREADS" >> >> to my own copy of the easyconfig. This does appear in >> the log file has having been set: >> >> == 2019-11-21 09:20:23,543 easyconfig.py:583 INFO setting easyconfig >> parameter buildopts: value -DSTAN_THREADS (type: <type 'str'>) >> >> but it is not passed to the compiler. The compile lines do contain >> other macros, but these are obviously coming from elsewhere: >> >> g++ -std=gnu++14 >> -I"/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64/R/include" >> -DNDEBUG -I"../inst/include" >> >> -I"`"/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64/R/bin/Rscript" >> --vanilla -e "cat(system.file('include', 'src', package = >> 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS >> -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION ... >> >> Any ideas how I could insert "-DSTAN_THREADS"? Or can this kind of >> thing only be done by patching the Makefile? >> >> Cheers, >> >> Loris >> >> -- >> Dr. Loris Bennett (Mr.) >> ZEDAT, Freie Universität Berlin Email [email protected] >> -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
