Hi, So the admin node on which I normally build software does have 'zip', but as I was building TensorFlow with GPU support, I was doing this on a GPU node, which didn't have 'zip' installed :-/
I had a vague idea that external dependencies could be specified in an easyconfig, but I could only find some thing on external modules. Maybe I was thinking of '--filter-deps', but that's sort of the opposite of what one would need. Thanks for the pointer, Cheers, Loris Lars Viklund <[email protected]> writes: > For reference, EB documents the shell tools (including `unzip`) that may be > occasionally needed by easyconfigs: > > https://easybuild.readthedocs.io/en/latest/Installation.html#required-shell-tools > > Sounds like Bazel goes a bit beyond this and also assumes that the environment > has the ability to zip things. Lovely :D > > // Lars > > On 2/25/20 5:06 PM, Terje Kvernes wrote: >> Hi Loris, >> >> From the output it would seem that zip is an implied system dependency in >> Bazel. Depending on the underlying distribution, the easiest solution is >> probably to install zip as a system package via yum/dnf/apt-get/etc. >> >> I took a quick look at the easyconfig tree and didn’t find a suitable zip to >> add as a dependency, so I’m guessing this has gone under the radar as >> “everyone” already had zip installed. >> >> I’m not sure what the long-term solution is here, as I’m not sure one wants >> to >> move zip from a system dependency to a toolchain one, but opening an issue on >> https://github.com/easybuilders/easybuild-easyconfigs/issues is probably a >> good idea. :-) >> >>> On 25 Feb 2020, at 16:53, Loris Bennett <[email protected]> wrote: >>> >>> Hi, >>> >>> Bazel-0.26.1-GCCcore-8.3.0.eb is failing with the following error: >>> >>> ^MESC[1AESC[KESC[31mESC[1mERROR: >>> ESC[0m/trinity/shared/easybuild/build/Bazel/0.26.1/GCCcore-8.3.0/src/BUILD:339:2: >>> Executing genrule //src:package-zip_nojdk failed (Exit 127): bash failed: >>> error executing command >>> (cd /tmp/eb-0CJXT7/bazel_M82PHrmR/out/execroot/io_bazel && \ >>> exec env - \ >>> >>> LD_LIBRARY_PATH=/trinity/shared/easybuild/software/Java/1.8.0_192/lib:/trinity/shared/easybuild/software/Python/3.7.4-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/trinity/shared/easybuild/software/libffi/3.2.1-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/GMP/6.1.2-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/XZ/5.2.4-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/libreadline/8.0-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/ncurses/6.1-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/binutils/2.32-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/zlib/1.2.11-GCCcore-8.3.0/lib:/trinity/shared/easybuild/software/GCCcore/8.3.0/lib/gcc/x86_64-pc-linux-gnu/8.3.0:/trinity/shared/easybuild/software/GCCcore/8.3.0/lib64:/trinity/shared/easybuild/software/GCCcore/8.3.0/lib >>> \ >>> >>> PATH=/trinity/shared/easybuild/software/Java/1.8.0_192:/trinity/shared/easybuild/software/Java/1.8.0_192/bin:/trinity/shared/easybuild/software/Python/3.7.4-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/XZ/5.2.4-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/SQLite/3.29.0-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/Tcl/8.6.9-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/ncurses/6.1-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/bzip2/1.0.8-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/binutils/2.32-GCCcore-8.3.0/bin:/trinity/shared/easybuild/software/GCCcore/8.3.0/bin:/trinity/shared/easybuild/software/EasyBuild/4.1.1/bin:/trinity/shared/zedat/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/bin/syscfg:/trinity/home/build/.local/bin:/trinity/home/build/bin >>> \ >>> /bin/bash -c 'source >>> external/bazel_tools/tools/genrule/genrule-setup.sh; src/package-bazel.sh >>> bazel-out/k8-opt/bin/src/package_nojdk.zip >>> bazel-out/k8-opt/bin/src/embedded_tools_nojdk.zip >>> bazel-out/k8-opt/bin/src/main/java/com/google/devtools/build/lib/bazel/BazelServer_deploy.jar >>> bazel-out/k8-opt/bin/src/install_base_key_nojdk >>> bazel-out/k8-opt/bin/src/main/native/libunix.so >>> bazel-out/k8-opt/bin/src/main/tools/build-runfiles >>> bazel-out/k8-opt/bin/src/main/tools/process-wrapper >>> src/main/tools/jdk.BUILD bazel-out/k8-opt/bin/src/main/tools/linux-sandbox >>> bazel-out/k8-opt/bin/tools/osx/xcode-locator >>> bazel-out/k8-opt/bin/src/main/tools/daemonize') >>> Execution platform: @bazel_tools//platforms:host_platform >>> ESC[32m[1,793 / 1,794]ESC[0m checking cached actions >>> ^MESC[1AESC[Ksrc/package-bazel.sh: line 42: zip: command not found >>> >>> Anyone know what sort of zip package is missing here? >>> >>> Cheers, >>> >>> Loris >>> >>> -- >>> Dr. Loris Bennett (Mr.) >>> ZEDAT, Freie Universität Berlin Email [email protected] >> > -- Dr. Loris Bennett (Mr.) ZEDAT, Freie Universität Berlin Email [email protected]
