Hi Kenneth,
Thank for the prompt response. Please see comment inline below.
Cheers,
Loris
Kenneth Hoste <[email protected]> writes:
Hi Loris,
On 16/04/2020 13:08, Loris Bennett wrote:
Hi,
Using EB 4.2.0, I just ran
eb V8-2.2-foss-2018b-R-3.5.1.eb --robot
and got the following error:
== FAILED: Installation ended unsuccessfully (build directory:
/trinity/shared/easybuild/build/V8/2.2/foss-2018b-R-3.5.1): build failed
(first 300 chars): Module command 'module load R/3.5.1-foss-2018b' failed with
exit code 1; stderr: Lmod has detected the following error: The following
module(s) are unknown: "Java/1.8"
I can however load the individual modules 'Java/1.8' and
'R/3.5.1-foss-2018b' directly.
Any ideas what the problem might be?
Does the problem also occur when you're loading R/3.5.1-foss-2018b yourself in a
clean environment (without loading Java first)?
No.
We'll need some more information on this, preferably including (debug) log that
gives us some more context.
In addition:
* Which version of Lmod are you using?
8.2.7
* What's your EasyBuild configuration (output of "eb --show-config" should be
enough)?
[build@admin eco]$ eb --show-config
#
# Current EasyBuild configuration
# (C: command line argument, D: default value, E: environment variable, F:
configuration file)
#
buildpath (F) = /trinity/shared/easybuild/build
containerpath (F) = /trinity/shared/easybuild/containers
git-working-dirs-path (F) = /trinity/home/build/git/easybuild-easyconfigs
hooks (F) = /trinity/home/build/hooks/hpc_hooks.py
installpath (E) = /trinity/shared/easybuild
packagepath (F) = /trinity/shared/easybuild/packages
prefix (E) = /trinity/shared/easybuild
repositorypath (F) = /trinity/shared/easybuild/ebfiles_repo
robot-paths (D) =
/trinity/shared/easybuild/software/EasyBuild/4.2.0/easybuild/easyconfigs
sourcepath (F) = /trinity/shared/easybuild/sources
* What output do you get from "module show Java/1.8" in a clean environment
(before loading that module)?
[13:57:02] loris@login (999) ~
$ module show Java/1.8
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
/trinity/shared/easybuild/modules/all/Java/1.8.0_231.lua:
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Java Platform, Standard Edition (Java SE) lets you develop and deploy
Java applications on desktops and servers.
More information
================
- Homepage: https://java.com/
]])
whatis("Description: Java Platform, Standard Edition (Java SE) lets you develop
and deploy
Java applications on desktops and servers.")
whatis("Homepage: https://java.com/";)
whatis("URL: https://java.com/";)
conflict("Java")
prepend_path("CPATH","/trinity/shared/easybuild/software/Java/1.8.0_231/include")
prepend_path("LD_LIBRARY_PATH","/trinity/shared/easybuild/software/Java/1.8.0_231/lib")
prepend_path("LIBRARY_PATH","/trinity/shared/easybuild/software/Java/1.8.0_231/lib")
prepend_path("MANPATH","/trinity/shared/easybuild/software/Java/1.8.0_231/man")
prepend_path("PATH","/trinity/shared/easybuild/software/Java/1.8.0_231/bin")
setenv("EBROOTJAVA","/trinity/shared/easybuild/software/Java/1.8.0_231")
setenv("EBVERSIONJAVA","1.8.0_231")
setenv("EBDEVELJAVA","/trinity/shared/easybuild/software/Java/1.8.0_231/easybuild/Java-1.8.0_231-easybuild-devel")
prepend_path("PATH","/trinity/shared/easybuild/software/Java/1.8.0_231")
setenv("JAVA_HOME","/trinity/shared/easybuild/software/Java/1.8.0_231")
Same request for "R/3.5.1-foss-2018b".
$ module show R/3.5.1-foss-2018b
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
/trinity/shared/easybuild/modules/all/R/3.5.1-foss-2018b.lua:
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
R is a free software environment for statistical computing and graphics.
More information
================
- Homepage: http://www.r-project.org/
Included extensions
===================
abc-2.1, abc.data-1.0, abind-1.4-5, acepack-1.4.1, adabag-4.2, ade4-1.7-11,
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compositions-1.40-2, corpcor-1.6.9, cowplot-0.9.3, crayon-1.3.4,
crosstalk-1.0.0, crul-0.6.0, csSAM-1.2.4, cubature-1.4, curl-3.2, cvAUC-1.1.0,
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dbplyr-1.2.2, ddalpha-1.3.4, deal-1.2-37, debugme-1.1.0, deldir-0.1-15,
dendextend-1.8.0, DEoptimR-1.0-8, Deriv-3.8.5, desc-1.2.0, deSolve-1.21,
devtools-1.13.6, DHARMa-0.2.0, diagram-1.6.4, DiagrammeR-1.0.0,
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dynamicTreeCut-1.63-1, e1071-1.7-0, EasyABC-1.5, ellipse-0.4.1,
emulator-1.2-17, energy-1.7-5, ergm-3.9.4, ergm.count-3.3.0, evaluate-0.11,
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formatR-1.5, Formula-1.2-3, fossil-0.3.7, fpc-2.1-11.1, fpp-0.5,
fracdiff-1.4-2, futile.logger-1.4.3, futile.options-1.0.1, future-1.9.0, g-r,
g-r, g-r, gam-1.16, gamlss-5.1-2, gamlss.data-5.0-1, gamlss.dist-5.0-6,
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gclus-1.3.1, gdalUtils-2.0.1.14, gdata-2.18.0, gdistance-1.2-2, gee-4.13-19,
geepack-1.2-1, geiger-2.0.6, GeneNet-1.2.13, GenSA-1.1.7, geometry-0.3-6,
getopt-1.20.2, GetoptLong-0.1.7, GGally-1.4.0, ggbeeswarm-0.6.0,
ggforce-0.1.3, ggm-2.3, ggplot2-3.0.0, ggraph-1.0.2, ggrepel-0.8.0,
ggridges-0.5.0, ggvis-0.4.3, GillespieSSA-0.5-4, git2r-0.23.0, glasso-1.10,
gllvm-1.0, glmmML-1.0.3, glmmTMB-0.2.2.0, glmnet-2.0-16, GlobalOptions-0.1.0,
globals-0.12.1, glue-1.3.0, gmm-1.6-2, gmodels-2.18.1, goftest-1.1-1,
gomms-1.0, gower-0.1.2, gplots-3.0.1, gridBase-0.4-7, gridExtra-2.3,
grpreg-3.2-0, GSA-1.03, gsalib-2.1, gsw-1.0-5, gtable-0.2.0, gtools-3.8.1,
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htmltools-0.3.6, htmlwidgets-1.2, httpcode-0.2.0, httpuv-1.4.5, httr-1.3.1,
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igraph-1.2.2, imager-0.41.1, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0,
interpretR-0.2.4, inum-1.0-0, ipred-0.9-7, irace-3.1, irlba-2.3.2, Iso-0.0-17,
iterators-1.0.10, itertools-0.1-3, JBTools-0.7.2.9, jomo-2.6-3, jpeg-0.1-8,
jsonlite-1.5, kernlab-0.9-27, KernSmooth-2.23-15, klaR-0.6-14, knitr-1.20,
KODAMA-1.4, kohonen-3.0.6, ks-1.11.3, labdsv-1.8-0, labeling-0.3,
labelled-1.1.0, laeken-0.4.6, lambda.r-1.2.3, lars-1.2, later-0.7.3,
later-0.7.4, lattice-0.20-35, latticeExtra-0.6-28, lava-1.6.3, lavaan-0.6-2,
lazy-1.2-16, lazyeval-0.2.1, leaps-3.0, LearnBayes-2.15.1, lhs-0.16,
libcoin-1.0-1, limSolve-1.5.5.3, liquidSVM-1.2.2, listenv-0.7.0,
lme4-1.1-18-1, Lmoments-1.2-3, lmtest-0.9-36, locfdr-1.1-8, locfit-1.5-9.1,
logcondens-2.1.5, logistf-1.23, logspline-2.1.11, longitudinal-1.1.12,
longmemo-1.0-0, lpSolve-5.6.13, lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e,
magic-1.5-8, magrittr-1.5, manipulateWidget-0.10.0, maps-3.3.0,
maptools-0.9-3, markdown-0.8, MASS-7.3-50, Matching-4.9-3, MatchIt-3.0.2,
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network-1.13.0.1, networkDynamic-0.9.0, neuRosim-0.2-12, nleqslv-3.3.2,
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polyclip-1.9-1, polynom-1.3-9, prabclus-2.2-6, pracma-2.1.4, praise-1.0.0,
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prodlim-2018.04.18, profileModel-0.5-9, progress-1.2.0, promises-1.0.1,
promises-1.0.1, proto-1.0.0, proxy-0.4-22, pryr-0.1.4, ps-1.1.0, pscl-1.5.2,
pspline-1.0-18, psych-1.8.4, pulsar-0.3.4, purrr-0.2.5, pvclust-2.0-0,
qgraph-1.5, qrnn-2.0.3, quadprog-1.5-5, quantmod-0.4-13, quantreg-5.36,
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R.oo-1.22.0, R.rsp-0.42.0, R.utils-2.6.0, R6-2.2.2, randomForest-4.6-14,
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RColorBrewer-1.1-2, Rcpp-0.12.18, RcppArmadillo-0.9.100.5.0,
RcppEigen-0.3.3.4.0, RcppGSL-0.3.6, RcppProgress-0.4.1, RcppRoll-0.3.0,
RCurl-1.95-4.11, Rdpack-0.9-0, readbitmap-0.1.5, readr-1.1.1, readxl-1.1.0,
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shinydashboard-0.7.0, shinythemes-1.1.2, signal-0.7-6, SimSeq-1.4.0,
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TMB-1.7.14, tmvtnorm-1.4-10, TraMineR-2.0-8, tree-1.0-39, triebeard-0.3.0,
trimcluster-0.1-2.1, tripack-1.3-8, trust-0.1-7, tseries-0.10-45,
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viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.4, waveslim-1.7.5,
webshot-0.5.0, whisker-0.3-2, WikidataR-1.4.0, WikipediR-1.5.0,
wikitaxa-0.2.0, withr-2.1.2, worrms-0.2.8, WriteXLS-4.0.0, xfun-0.3,
xlsx-0.6.1, xlsxjars-0.6.1, XML-3.98-1.15, xml2-1.2.0, xtable-1.8-2,
xts-0.11-0, yaml-2.2.0, zip-1.0.0, zoo-1.8-3
]])
whatis("Description: R is a free software environment for statistical computing and
graphics.")
whatis("Homepage: http://www.r-project.org/";)
whatis("Extensions: abc-2.1, abc.data-1.0, abind-1.4-5, acepack-1.4.1, adabag-4.2,
ade4-1.7-11, adegenet-2.1.1, adephylo-1.1-11, ADGofTest-0.3, aggregation-1.0.1,
akima-0.6-2, AlgDesign-1.1-7.3, animation-2.5, aod-1.3, ape-5.1, arm-1.10-1,
asnipe-1.1.11, assertthat-0.2.0, AUC-0.3.0, audio-0.1-5.1, b-a, backports-1.1.2,
bartMachine-1.2.4.2, bartMachineJARs-1.1, base64-2.0, base64enc-0.1-3, BatchJobs-1.7,
BayesianTools-0.1.5, bayesm-3.1-0.1, BB-2014.10-1, BBmisc-1.11, BDgraph-2.51,
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bigmemory-4.5.33, bigmemory.sri-0.1.3, bindr-0.1.1, bindrcpp-0.2.2, bio3d-2.3-4,
biom-0.3.12, bit-1.1-14, bit64-0.9-7, bitops-1.0-6, blob-1.1.1, bmp-0.3, bnlearn-4.3,
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chron-2.3-52, circlize-0.4.4, circular-0.4-93, class-7.3-14, classInt-0.2-3, cli-1.0.0,
clipr-0.4.1, cluster-2.0.7-1, clusterGeneration-1.3.4, clusterRepro-0.5-1.1,
clustree-0.2.2, clValid-0.6-6, coda-0.19-1, codetools-0.2-15, coin-1.2-2,
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devtools-1.13.6, DHARMa-0.2.0, diagram-1.6.4, DiagrammeR-1.0.0, dichromat-2.0-0,
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distillery-1.0-4, distr-2.7.0, distrEx-2.7.0, DistributionUtils-0.5-1, diveRsity-1.9.90,
doMC-1.3.5, doParallel-1.0.11, doRNG-1.7.1, doSNOW-1.0.16, dotCall64-1.0-0,
downloader-0.4, dplyr-0.7.6, DRR-0.0.3, DT-0.4, dtangle-0.3.1, DTRreg-1.3, dtw-1.20-1,
dummies-1.5.6, dynamicTreeCut-1.63-1, e1071-1.7-0, EasyABC-1.5, ellipse-0.4.1,
emulator-1.2-17, energy-1.7-5, ergm-3.9.4, ergm.count-3.3.0, evaluate-0.11, expm-0.999-2,
expsmooth-2.3, extrafont-0.17, extrafontdb-1.0, extRemes-2.0-9, FactoMineR-1.41,
fail-1.3, fansi-0.3.0, fastcluster-1.1.25, fastICA-1.2-1, fastmatch-1.1-0,
fdrtool-1.2.15, feather-0.3.1, ff-2.2-14, ffbase-0.12.3, fftw-1.0-4, fields-9.6,
filehash-2.4-1, fishMod-0.29, fitdistrplus-1.0-11, flashClust-1.01-2, flexclust-1.3-5,
flexmix-2.3-14, fma-2.3, FME-1.3.5, FNN-1.1.2.1, forcats-0.3.0, foreach-1.4.4,
forecast-8.4, foreign-0.8-71, formatR-1.5, Formula-1.2-3, fossil-0.3.7, fpc-2.1-11.1,
fpp-0.5, fracdiff-1.4-2, futile.logger-1.4.3, futile.options-1.0.1, future-1.9.0, g-r,
g-r, g-r, gam-1.16, gamlss-5.1-2, gamlss.data-5.0-1, gamlss.dist-5.0-6, gamlss.tr-5.1-0,
gap-1.1-22, gapfill-0.9.6, gbm-2.1.3, gbRd-0.4-11, gclus-1.3.1, gdalUtils-2.0.1.14,
gdata-2.18.0, gdistance-1.2-2, gee-4.13-19, geepack-1.2-1, geiger-2.0.6, GeneNet-1.2.13,
GenSA-1.1.7, geometry-0.3-6, getopt-1.20.2, GetoptLong-0.1.7, GGally-1.4.0,
ggbeeswarm-0.6.0, ggforce-0.1.3, ggm-2.3, ggplot2-3.0.0, ggraph-1.0.2, ggrepel-0.8.0,
ggridges-0.5.0, ggvis-0.4.3, GillespieSSA-0.5-4, git2r-0.23.0, glasso-1.10, gllvm-1.0,
glmmML-1.0.3, glmmTMB-0.2.2.0, glmnet-2.0-16, GlobalOptions-0.1.0, globals-0.12.1,
glue-1.3.0, gmm-1.6-2, gmodels-2.18.1, goftest-1.1-1, gomms-1.0, gower-0.1.2,
gplots-3.0.1, gridBase-0.4-7, gridExtra-2.3, grpreg-3.2-0, GSA-1.03, gsalib-2.1,
gsw-1.0-5, gtable-0.2.0, gtools-3.8.1, GUTS-1.1.0, h2o-3.22.1.1, haven-1.1.2,
hdf5r-1.0.0, heatmap3-1.1.1, hexbin-1.27.2, highr-0.7, Hmisc-4.1-1, hms-0.4.2,
htmlTable-1.12, htmltools-0.3.6, htmlwidgets-1.2, httpcode-0.2.0, httpuv-1.4.5,
httr-1.3.1, huge-1.2.7, hwriter-1.3.2, HWxtest-1.1.7, ica-1.0-2, IDPmisc-1.1.17,
igraph-1.2.2, imager-0.41.1, ineq-0.2-13, influenceR-0.1.0, infotheo-1.2.0,
interpretR-0.2.4, inum-1.0-0, ipred-0.9-7, irace-3.1, irlba-2.3.2, Iso-0.0-17,
iterators-1.0.10, itertools-0.1-3, JBTools-0.7.2.9, jomo-2.6-3, jpeg-0.1-8, jsonlite-1.5,
kernlab-0.9-27, KernSmooth-2.23-15, klaR-0.6-14, knitr-1.20, KODAMA-1.4, kohonen-3.0.6,
ks-1.11.3, labdsv-1.8-0, labeling-0.3, labelled-1.1.0, laeken-0.4.6, lambda.r-1.2.3,
lars-1.2, later-0.7.3, later-0.7.4, lattice-0.20-35, latticeExtra-0.6-28, lava-1.6.3,
lavaan-0.6-2, lazy-1.2-16, lazyeval-0.2.1, leaps-3.0, LearnBayes-2.15.1, lhs-0.16,
libcoin-1.0-1, limSolve-1.5.5.3, liquidSVM-1.2.2, listenv-0.7.0, lme4-1.1-18-1,
Lmoments-1.2-3, lmtest-0.9-36, locfdr-1.1-8, locfit-1.5-9.1, logcondens-2.1.5,
logistf-1.23, logspline-2.1.11, longitudinal-1.1.12, longmemo-1.0-0, lpSolve-5.6.13,
lqa-1.0-3, lsei-1.2-0, lubridate-1.7.4, m-e, magic-1.5-8, magrittr-1.5,
manipulateWidget-0.10.0, maps-3.3.0, maptools-0.9-3, markdown-0.8, MASS-7.3-50,
Matching-4.9-3, MatchIt-3.0.2, Matrix-1.2-14, matrixcalc-1.0-3, MatrixModels-0.4-1,
matrixStats-0.54.0, maxLik-1.3-4, mboost-2.9-0, mclust-5.4.1, mcmc-0.9-5, MCMCpack-1.4-4,
mediation-4.4.6, memoise-1.1.0, memuse-4.0-0, metap-1.0, mgcv-1.8-24, mi-1.0, mice-3.3.0,
mime-0.5, miniUI-0.1.1.1, minpack.lm-1.2-1, minqa-1.2.4, misc3d-0.8-4, miscTools-0.6-22,
missForest-1.4, mitml-0.3-6, mixtools-1.1.0, mlbench-2.1-1, mlegp-3.1.7, mlogit-0.3-0,
mlr-2.12.1, mltools-0.3.5, mnormt-1.5-5, ModelMetrics-1.2.0, modelr-0.1.2,
modeltools-0.2-22, moments-0.14, mpath-0.3-5, msm-1.6.6, multcomp-1.4-8,
multicool-0.1-10, munsell-0.5.0, mvabund-3.13.1, mvtnorm-1.0-8, natserv-0.1.4,
ncbit-2013.03.29, network-1.13.0.1, networkDynamic-0.9.0, neuRosim-0.2-12, nleqslv-3.3.2,
nlme-3.1-137, nloptr-1.0.4, NLP-0.1-11, NMF-0.21.0, NMF-0.21.0, nnet-7.3-12, nnls-1.4,
nor1mix-1.2-3, np-0.60-8, npsurv-0.4-0, numDeriv-2016.8-1, oce-0.9-23, OceanView-1.0.4,
oddsratio-1.0.3, openssl-1.0.2, openxlsx-4.1.0, optmatch-0.9-10, optparse-1.6.0,
ordinal-2018.4-19, pan-1.6, parallelMap-1.3, ParamHelpers-1.11, parsedate-1.1.3,
party-1.3-1, partykit-1.2-2, pastecs-1.3.21, pbapply-1.3-4, pbivnorm-0.6.0,
pbkrtest-0.4-7, pcaPP-1.9-73, penalized-0.9-51, peperr-1.1-7, permute-0.9-4,
phangorn-2.4.0, pheatmap-1.0.10, phylobase-0.8.4, pillar-1.3.0, pim-2.0.1,
pinfsc50-1.1.0, pixmap-0.4-11, pkgbuild-1.0.0, pkgconfig-2.0.2, pkgload-1.0.0,
pkgmaker-0.27, plogr-0.2.0, plot3D-1.1.1, plot3Drgl-1.0.1, plotly-4.8.0, plotrix-3.7-2,
pls-2.6-0, plyr-1.8.4, png-0.1-7, PoissonSeq-1.1.2, polspline-1.1.13, polyclip-1.9-1,
polynom-1.3-9, prabclus-2.2-6, pracma-2.1.4, praise-1.0.0, PresenceAbsence-1.1.9,
prettyunits-1.0.2, pROC-1.12.1, processx-3.2.0, prodlim-2018.04.18, profileModel-0.5-9,
progress-1.2.0, promises-1.0.1, promises-1.0.1, proto-1.0.0, proxy-0.4-22, pryr-0.1.4,
ps-1.1.0, pscl-1.5.2, pspline-1.0-18, psych-1.8.4, pulsar-0.3.4, purrr-0.2.5,
pvclust-2.0-0, qgraph-1.5, qrnn-2.0.3, quadprog-1.5-5, quantmod-0.4-13, quantreg-5.36,
questionr-0.6.3, R.cache-0.13.0, R.matlab-3.6.1, R.methodsS3-1.7.1, R.oo-1.22.0,
R.rsp-0.42.0, R.utils-2.6.0, R6-2.2.2, randomForest-4.6-14, randomForestSRC-2.7.0,
ranger-0.10.1, RANN-2.6, raster-2.6-7, RCircos-1.2.0, RColorBrewer-1.1-2, Rcpp-0.12.18,
RcppArmadillo-0.9.100.5.0, RcppEigen-0.3.3.4.0, RcppGSL-0.3.6, RcppProgress-0.4.1,
RcppRoll-0.3.0, RCurl-1.95-4.11, Rdpack-0.9-0, readbitmap-0.1.5, readr-1.1.1,
readxl-1.1.0, recipes-0.1.3, registry-0.5, rematch-1.0.1, rentrez-1.2.1, reprex-0.2.0,
reshape-0.8.7, reshape2-1.4.3, reticulate-1.10, RGCCA-2.1.2, rgdal-1.3-4, rgexf-0.15.3,
rgl-0.99.16, RInside-0.2.14, rio-0.5.10, ritis-0.7.2, RItools-0.1-16, rJava-0.9-10,
rjson-0.2.20, RJSONIO-1.3-0, rlang-0.2.2, rlecuyer-0.3-4, rmarkdown-1.10, rmeta-3.0,
Rmpi-0.6-7, rms-5.1-2, RMTstat-0.3, rncl-0.8.3, RNeXML-2.1.2, rngtools-1.3.1,
robustbase-0.93-2, ROCR-1.0-7, Rook-1.1-1, rootSolve-1.7, rotl-3.0.4, roxygen2-6.1.0,
rpart-4.1-13, rprojroot-1.3-2, rrcov-1.4-4, rredlist-0.5.0, RSNNS-0.4-11, RSQLite-2.1.1,
Rssa-1.0, rstudioapi-0.7, Rtsne-0.13, Rttf2pt1-1.3.7, RUnit-0.4.32, rversions-1.0.3,
rvest-0.3.2, RWeka-0.4-38, RWekajars-3.9.2-1, s-p, s-t, s-t, sandwich-2.5-0,
scales-1.0.0, scatterplot3d-0.3-41, SDMTools-1.1-221, seewave-2.1.0, segmented-0.5-3.0,
selectr-0.4-1, sem-3.1-9, sendmailR-1.2-1, seqinr-3.4-5, sfsmisc-1.1-2, shape-1.4.4,
shapefiles-0.7, shiny-1.1.0, shinydashboard-0.7.0, shinythemes-1.1.2, signal-0.7-6,
SimSeq-1.4.0, SKAT-1.3.2.1, slam-0.1-43, sm-2.2-5.5, smoother-1.1, sn-1.5-2, sna-2.4,
snow-0.4-2, snowfall-1.84-6.1, solrium-1.0.0, som-0.3-5.1, soundecology-1.3.3,
sourcetools-0.1.7, sp-1.3-1, spam-2.2-0, SparseM-1.77, spatial-7.3-11, spatstat-1.56-1,
spatstat.data-1.3-1, spatstat.utils-1.9-0, spData-0.2.9.3, spdep-0.7-8,
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statnet-2018.10, statnet.common-4.1.4, stringi-1.2.4, stringr-1.3.1, strucchange-1.5-1,
subplex-1.5-4, SuperLearner-2.0-24, SuppDists-1.1-9.4, survival-2.42-6,
survivalROC-1.0.3, svd-0.4.1, t-o, taxize-0.9.4, tclust-1.4-1, TeachingDemos-2.10,
tensor-1.5, tensorA-0.36.1, tergm-3.5.2, testthat-2.0.0, TH.data-1.0-9, tibble-1.4.2,
tidygraph-1.1.0, tidyr-0.8.1, tidyselect-0.2.4, tidyverse-1.2.1, tiff-0.1-5,
timeDate-3043.102, timereg-1.9.2, tinytex-0.6, tkrplot-0.0-24, tm-0.7-5, TMB-1.7.14,
tmvtnorm-1.4-10, TraMineR-2.0-8, tree-1.0-39, triebeard-0.3.0, trimcluster-0.1-2.1,
tripack-1.3-8, trust-0.1-7, tseries-0.10-45, tseriesChaos-0.1-13, tsna-0.2.0, tsne-0.1-3,
TTR-0.23-3, tuneR-1.3.3, tweedie-2.3.2, tweenr-0.1.5, u-t, ucminf-1.1-4, unbalanced-2.0,
uniqueAtomMat-0.1-3-2, units-0.6-1, urca-1.3-0, urltools-1.7.1, uroot-2.0-9, utf8-1.1.4,
uuid-0.1-2, vcd-1.4-4, vcfR-1.8.0, vegan-2.5-2, VennDiagram-1.6.20, VGAM-1.0-5,
VIM-4.7.0, vioplot-0.2, vipor-0.4.5, viridis-0.5.1, viridisLite-0.3.0, visNetwork-2.0.4,
waveslim-1.7.5, webshot-0.5.0, whisker-0.3-2, WikidataR-1.4.0, WikipediR-1.5.0,
wikitaxa-0.2.0, withr-2.1.2, worrms-0.2.8, WriteXLS-4.0.0, xfun-0.3, xlsx-0.6.1,
xlsxjars-0.6.1, XML-3.98-1.15, xml2-1.2.0, xtable-1.8-2, xts-0.11-0, yaml-2.2.0,
zip-1.0.0, zoo-1.8-3")
conflict("R")
load("foss/2018b")
load("X11/20180604-GCCcore-7.3.0")
load("Mesa/18.1.1-foss-2018b")
load("libGLU/9.0.0-foss-2018b")
load("cairo/1.14.12-GCCcore-7.3.0")
load("libreadline/7.0-GCCcore-7.3.0")
load("ncurses/6.1-GCCcore-7.3.0")
load("bzip2/1.0.6-GCCcore-7.3.0")
load("XZ/5.2.4-GCCcore-7.3.0")
load("zlib/1.2.11-GCCcore-7.3.0")
load("SQLite/3.24.0-GCCcore-7.3.0")
load("PCRE/8.41-GCCcore-7.3.0")
load("libpng/1.6.34-GCCcore-7.3.0")
load("libjpeg-turbo/2.0.0-GCCcore-7.3.0")
load("LibTIFF/4.0.9-GCCcore-7.3.0")
load("Java/1.8")
load("Tk/8.6.8-GCCcore-7.3.0")
load("cURL/7.60.0-GCCcore-7.3.0")
load("libxml2/2.9.8-GCCcore-7.3.0")
load("GDAL/2.2.3-foss-2018b-Python-3.6.6")
load("PROJ/5.0.0-foss-2018b")
load("GMP/6.1.2-GCCcore-7.3.0")
load("NLopt/2.4.2-GCCcore-7.3.0")
load("FFTW/3.3.8-gompi-2018b")
load("libsndfile/1.0.28-GCCcore-7.3.0")
load("ICU/61.1-GCCcore-7.3.0")
load("HDF5/1.10.2-foss-2018b")
load("UDUNITS/2.2.26-foss-2018b")
load("GSL/2.5-GCC-7.3.0-2.30")
prepend_path("LD_LIBRARY_PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64")
prepend_path("LD_LIBRARY_PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64/R/lib")
prepend_path("LIBRARY_PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64")
prepend_path("LIBRARY_PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64/R/lib")
prepend_path("MANPATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/share/man")
prepend_path("PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/bin")
prepend_path("PKG_CONFIG_PATH","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/lib64/pkgconfig")
setenv("EBROOTR","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b")
setenv("EBVERSIONR","3.5.1")
setenv("EBDEVELR","/trinity/shared/easybuild/software/R/3.5.1-foss-2018b/easybuild/R-3.5.1-foss-2018b-easybuild-devel")
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