Hi all, I'm trying to build latest R (4.0.2) using EasyBuild 4.2.1 and foss/2020a:
ml list Currently Loaded Modules: 1) GCCcore/9.3.0 4) GCC/9.3.0 7) libxml2/2.9.10-GCCcore-9.3.0 10) UCX/1.8.0-GCCcore-9.3.0 13) gompi/2020a 16) foss/2020a 2) zlib/1.2.11-GCCcore-9.3.0 5) numactl/2.0.13-GCCcore-9.3.0 8) libpciaccess/0.16-GCCcore-9.3.0 11) OpenMPI/4.0.3-GCC-9.3.0 14) FFTW/3.3.8-gompi-2020a 3) binutils/2.34-GCCcore-9.3.0 6) XZ/5.2.5-GCCcore-9.3.0 9) hwloc/2.2.0-GCCcore-9.3.0 12) OpenBLAS/0.3.9-GCC-9.3.0 15) ScaLAPACK/2.1.0-gompi-2020a During the build I see a warning message: "WARNING: R is configured to be built without BLAS/LAPACK, which will > result in (very) poor performance" Checking the logs I see: External libraries: pcre2, readline, BLAS(OpenBLAS), curl so for some reason LAPACK from OpenBLAS is not found. in the logs I see: > == 2020-07-07 15:34:57,378 environment.py:97 INFO Environment variable > BLAS_LIBS set to -lopenblas -lgfortran (previously undefined) > [...] > ./configure > --prefix=/home/bria/easybuildinstall/software/R/4.0.2-foss-2020a > --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --enable-threads > --enable-BLAS-shlib --enable-R-shlib --enable-R-profiling > --enable-memory-profiling --with-pic --enable-prebuilt-html > --with-recommended-packages=no --with-libtiff --with-readline --with-libpng > --with-jpeglib --with-tcltk --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh > --with-tk-config=$EBROOTTK/lib/tkConfig.sh --with-cairo --enable-java > --with-x=yes *--with-blas --with-lapack* > --with-tcl-config=/apps/prod/easybuild/sl7.x86_64/software/Tcl/8.6.10-GCCcore-9.3.0/lib/tclConfig.sh > --with-tk-config=/apps/prod/easybuild/sl7.x86_64/software/Tk/8.6.10-GCCcore-9.3.0/lib/tkConfig.sh > --with-cairo --with-jpeglib --with-libpng --with-libtiff so with-blas and with-lapack are present. What 's happening? in previous build (with older toolcahins like 2017b) LACPAK from OpenBLAS is found: External libraries: readline, BLAS(OpenBLAS), *LAPACK(in blas)*, > curl Anyone could give a hand on this one? TIA, Arnau
