Hi Yann,
This:
libcuda.so.1: cannot open shared object file: No such file or directory
suggests that you're missing the necessary CUDA libraries in your OS.
libcuda.so.1 comes with the CUDA drivers (not with the CUDA runtime that
is installed with EasyBuild):
$ rpm -qf /usr/lib64/libcuda.so.1
nvidia-driver-latest-cuda-libs-455.23.05-1.el7.x86_64
regards,
Kenneth
On 15/01/2021 15:33, Yann Sagon wrote:
Dear list,
I'm trying to build R-3.6.2-fosscuda-2019b.eb with EB 4.3.2
I get an error:
== installing extension asnipe 1.1.12 (680/795)...
== installing extension liquidSVM 1.2.4 (681/795)...
== FAILED: Installation ended unsuccessfully (build directory:
/dev/shm/ebbuild/R/3.6.2/fosscuda-2019b): build failed (first 300
chars): cmd "LIQUIDSVM_TARGET="empty" R CMD INSTALL
/dev/shm/ebbuild/R/3.6.2/fosscuda-2019b/liquidSVM/liquidSVM
--library=/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/library
--no-clean-on-error " exited with exit code 1 and output:
* installing *source* package liquidSVM ...
** package liquidSVM successfu (took 2 hours 52 min 37 sec)
== Results of the build can be found in the log file(s)
/tmp/eb-57sk42/easybuild-R-3.6.2-20210115.113949.rQKDk.log
ERROR: Build of
/opt/ebsofts/EasyBuild/4.3.2/easybuild/easyconfigs/r/R/R-3.6.2-fosscuda-2019b.eb
failed (err: 'build failed (first 300 chars): cmd
"LIQUIDSVM_TARGET="empty" R CMD INSTALL
/dev/shm/ebbuild/R/3.6.2/fosscuda-2019b/liquidSVM/liquidSVM
--library=/opt/ebsofts/R/3.6.2-fosscuda-2019b/lib64/R/library
--no-clean-on-error " exited with exit code 1 and output:\n* installing
*source* package liquidSVM ...\n** package liquidSVM successfu')
[sagon@node025 ~] $ view
/tmp/eb-57sk42/easybuild-R-3.6.2-20210115.113949.rQKDk.log
Details in https://gist.github.com/ysagon/a9f70577ed3e5e6a3f2d388e6c000f5c
Thanks for any clue!
Best
Yann
--
Logo UNIGE Yann Sagon
Référent HPC
Division du système et des technologies de l'information et de la
communication
Université de Genève | 24 rue Général-Dufour
Tél 022 379 77 37 | Bureau 151
www.unige.ch/stic <http://www.unige.ch/stic>
