Dear EasyBuilders,
I'm trying to get EasyBuild modules up and running on an external cluster
with AMD EPYC 7351 and running CentOS 7.6. With EB 4.3.3 I can't get
OpenMPI to build :-( I'm trying to build this module:
$ eb GPAW-21.1.0-foss-2020b-ASE-3.21.1.eb -r
== Temporary log file in case of crash /tmp/eb-b3w2Qf/easybuild-WAbEyF.log
== found valid index for
/groups/physics/modules/software/EasyBuild/4.3.3/easybuild/easyconfigs, so
using it...
== found valid index for
/groups/physics/modules/software/EasyBuild/4.3.3/easybuild/easyconfigs, so
using it...
== resolving dependencies ...
== processing EasyBuild easyconfig
/groups/physics/modules/software/EasyBuild/4.3.3/easybuild/easyconfigs/o/OpenMPI/OpenMPI-4.0.5-GCC-10.2.0.eb
== building and installing OpenMPI/4.0.5-GCC-10.2.0...
== fetching files...
== creating build dir, resetting environment...
== unpacking...
== patching...
== preparing...
== configuring...
== FAILED: Installation ended unsuccessfully (build directory:
/groups/physics/modules/build/OpenMPI/4.0.5/GCC-10.2.0): build failed
(first 300 chars): cmd " ./configure
--prefix=/groups/physics/modules/software/OpenMPI/4.0.5-GCC-10.2.0
--build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu
--enable-mpirun-prefix-by-default --enable-shared
--with-hwloc=/groups/physics/modules/software/hwloc/2.2.0-GCCcore-10.2.0
--with-libevent=/groups/physics (took 1 min 38 sec)
== Results of the build can be found in the log file(s)
/tmp/eb-b3w2Qf/easybuild-OpenMPI-4.0.5-20210311.085550.clqtp.log
The logfile ends with these warnings and errors:
--- MCA component btl:usnic (m4 configuration macro)
checking for MCA component btl:usnic compile mode... dso
checking size of void *... (cached) 8
checking for 64 bit Linux... yes
checking --with-ofi value... sanity check ok
(/groups/physics/modules/software/libfabric/1.11.0-GCCcore-10.2.0)
checking --with-ofi-libdir value... simple ok (unspecified value)
checking looking for OFI libfabric in...
(/groups/physics/modules/software/libfabric/1.11.0-GCCcore-10.2.0)
checking rdma/fabric.h usability... yes
checking rdma/fabric.h presence... yes
checking for rdma/fabric.h... yes
looking for library in lib
checking for library containing fi_getinfo... -lfabric
checking if libfabric requires libnl v1 or v3... v1 v3
configure: WARNING: Unfortunately, libfabric links to both libnl and libnl-3.
configure: WARNING: This is a configuration that is *known* to cause
run-time crashes.
configure: WARNING: This is an error in libfabric (not Open MPI).
configure: WARNING: Open MPI will therefore skip using libfabric.
configure: WARNING: OFI libfabric support requested (via --with-ofi or
--with-libfabric), but not found.
configure: error: Cannot continue.
(at easybuild/tools/run.py:533 in parse_cmd_output)
== 2021-03-11 08:57:29,620 filetools.py:1785 INFO Removing lock
/groups/physics/modules/software/.locks/_groups_physics_modules_software_OpenMPI_4.0.5-GCC-10.2.0.lock...
== 2021-03-11 08:57:29,621 filetools.py:341 INFO Path
/groups/physics/modules/software/.locks/_groups_physics_modules_software_OpenMPI_4.0.5-GCC-10.2.0.lock
successfully removed.
== 2021-03-11 08:57:29,621 filetools.py:1789 INFO Lock removed:
/groups/physics/modules/software/.locks/_groups_physics_modules_software_OpenMPI_4.0.5-GCC-10.2.0.lock
== 2021-03-11 08:57:29,621 easyblock.py:3389 WARNING build failed (first
300 chars): cmd " ./configure
--prefix=/groups/physics/modules/software/OpenMPI/4.0.5-GCC-10.2.0
--build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu
--enable-mpirun-prefix-by-default --enable-shared
--with-hwloc=/groups/physics/modules/software/hwloc/2.2.0-GCCcore-10.2.0
--with-libevent=/groups/physics
== 2021-03-11 08:57:29,621 easyblock.py:298 INFO Closing log for
application name OpenMPI version 4.0.5
Can someone tell me what's going on here? We don't have this problem on
our own cluster.
Thanks,
Ole
--
Ole Holm Nielsen
PhD, Senior HPC Officer
Department of Physics, Technical University of Denmark
