Seems like Medaka is doing naughty stuff: https://github.com/nanoporetech/medaka/blob/master/Makefile#L76
You probably need to patch the Makefile so an EB-provided version of those downloaded deps are used. On Tue, 17 May 2022 at 15:27, Loris Bennett <[email protected]> wrote: > Hi, > > I have successfully installed > > medaka-1.5.0-foss-2021a.eb > > I then created an EC with the following changes for medaka 1.6.0: > > $ diff > /trinity/shared/easybuild/software/EasyBuild/4.5.4/easybuild/easyconfigs/m/medaka/medaka-1.5.0-foss-2021a.eb > medaka-1.6.0-foss-2021a.eb > 13c13 > < version = '1.5.0' > --- > > version = '1.6.0' > 26c26 > < ('TensorFlow', '2.5.3'), > --- > > ('TensorFlow', '2.6.0'), > 35c35 > < ('ont-fast5-api', '4.0.0'), > --- > > ('ont-fast5-api', '4.0.2'), > 47c47 > < 'checksums': > ['8a0b8d5997fe45b8d5a1317b2b6bfe117cb6b551928faef62e4e958cf14b5ea4'], > --- > > 'checksums': > ['a8389f90cba77095061c4ff22c7cce8d73908e2451fa1d07b94c2f8ce4152628'], > > The new TensorFlow and ont-fast5-api packages seem to be built and > installed correctly, but building medaka itself fails with the following > error: > > ld.gold: error: libhts.a(hts.o): requires unsupported dynamic reloc 11; > recompile with -fPIC > > Does anyone have an idea what might be causing this? > > Cheers, > > Loris > > -- > Dr. Loris Bennett (Herr/Mr) > ZEDAT, Freie Universität Berlin Email [email protected] >
