Hi Sebastian, Sebastian Potthoff <[email protected]> writes:
> Hi there, > > I am trying to upgrade our EB installation from 4.6.2 to the latest 4.7.0, > using > > eb --install-latest > > and in doing so, come across this error: > > > > == 2023-02-22 14:16:59,395 build_log.py:171 ERROR EasyBuild crashed with an > error (at easybuild/base/exceptions.py:126 in __init__): cmd " > /usr/bin/python3 -m pip install --prefix=/easybuild/software/EasyBuild/4.7.0 > --no-deps --ignore-installed ." exited with exit code 1 and output: > Exception: > Traceback (most recent call last): > File "/usr/lib/python3.6/site-packages/pip/basecommand.py", line 215, in > main > status = self.run(options, args) > File "/usr/lib/python3.6/site-packages/pip/commands/install.py", line 294, > in run > with self._build_session(options) as session: > File "/usr/lib/python3.6/site-packages/pip/basecommand.py", line 69, in > _build_session > if options.cache_dir else None > File "/usr/lib64/python3.6/posixpath.py", line 80, in join > a = os.fspath(a) > TypeError: expected str, bytes or os.PathLike object, not int > > > > Now this seems to be caused by the fairly old pip3 version 9.0.3 which comes > with CentOS-7.9. I tried to upgrade the systems' pip3 installation as root by > hand (pip install pip --upgrade) but EB is still (intentionally?) using the > original one. > > ... > == 2023-02-22 14:16:58,553 pythonpackage.py:212 INFO Determining pip > version... > == 2023-02-22 14:16:58,553 run.py:236 INFO running cmd: /usr/bin/python3 -m > pip --version > == 2023-02-22 14:16:58,878 pythonpackage.py:220 INFO Found pip version: 9.0.3 > == 2023-02-22 14:16:58,879 pythonpackage.py:481 INFO Found pip version 9.0.3, > OK > … > > > > > Python packages installed via *yum* live in > /usr/lib/python3.6/site-packages/ > > while „pip“ installed packages (with root) live in > /usr/local/lib/python3.6/site-packages/ > > Did anyone else experience this behaviour? And wouldn’t this kind of error > have been caught by one of the unit tests while in testing? We have installed EasyBuild 4.7.0 successfully on CentOS 7.9. Does it still fail if you do PYTHONPATH= eb --install-latest ? Cheers, Loris -- Dr. Loris Bennett (Herr/Mr) ZEDAT, Freie Universität Berlin
