I am trying to install ESMF-8.3.0-foss-2022a.eb here. I always end up with this error at the install step:
make chkdir_apps make[5]: Entering directory '/dev/shm/strube1/jurecadc/ESMF/8.3.0/foss-2022a/esmf-8.3.0/src/apps/ESMF_PrintInfo' make[5]: Leaving directory '/dev/shm/strube1/jurecadc/ESMF/8.3.0/foss-2022a/esmf-8.3.0/src/apps/ESMF_PrintInfo' mpifort -m64 -mcmodel=small -pthread -Wl,--no-as-needed -fopenmp -L/p/project/ccstao/cstao05/easybuild/jurecadc/software/ESMF/8.3.0-foss-2022a/lib -L/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/bzip2/1.0.8-GCCcore-11.3.0/lib64 -L/p/software/jurecadc/stages/2023/software/bzip2/1.0.8-GCCcore-11.3.0/lib -L/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib64 -L/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib -L/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib/gcc/x86_64-pc-linux-gnu/11.3.0/../../../../lib64/ -Wl,-rpath,/p/project/ccstao/cstao05/easybuild/jurecadc/software/ESMF/8.3.0-foss-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/PnetCDF/1.12.3-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/PnetCDF/1.12.3-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/libarchive/3.6.1-GCCcore-11.3.0/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/libarchive/3.6.1-GCCcore-11.3.0/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF-C++4/4.3.1-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF-C++4/4.3.1-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/FFTW.MPI/3.3.10-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/FFTW.MPI/3.3.10-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/bzip2/1.0.8-GCCcore-11.3.0/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/bzip2/1.0.8-GCCcore-11.3.0/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib64 -Wl,-rpath,/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib -Wl,-rpath,/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib/gcc/x86_64-pc-linux-gnu/11.3.0/../../../../lib64/ -o /p/project/ccstao/cstao05/easybuild/jurecadc/software/ESMF/8.3.0-foss-2022a/bin/ESMF_PrintInfo /dev/shm/strube1/jurecadc/ESMF/8.3.0/foss-2022a/esmf-8.3.0//obj/objO/Linux.gfortran.64.openmpi.default/src/apps/ESMF_PrintInfo/ESMF_PrintInfo.o -lesmf -lrt -lstdc++ -ldl -L/p/software/jurecadc/stages/2023/software/PnetCDF/1.12.3-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/PnetCDF/1.12.3-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/libarchive/3.6.1-GCCcore-11.3.0/lib64 -L/p/software/jurecadc/stages/2023/software/libarchive/3.6.1-GCCcore-11.3.0/lib -L/p/software/jurecadc/stages/2023/software/netCDF-C++4/4.3.1-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/netCDF-C++4/4.3.1-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/netCDF-Fortran/4.6.0-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/FFTW.MPI/3.3.10-gompi-2022a/lib64 -L/p/software/jurecadc/stages/2023/software/FFTW.MPI/3.3.10-gompi-2022a/lib -L/p/software/jurecadc/stages/2023/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib64 -L/p/software/jurecadc/stages/2023/software/ScaLAPACK/2.2.0-gompi-2022a-fb/lib -L/p/software/jurecadc/stages/2023/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib64 -L/p/software/jurecadc/stages/2023/software/FlexiBLAS/3.2.0-GCC-11.3.0/lib -L/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib64 -L/p/software/jurecadc/stages/2023/software/GCCcore/11.3.0/lib -lflexiblas -lgfortran -lnetcdf -lnetcdff -lnetcdf -lnetcdf -lpioc /p/software/jurecadc/stages/2023/software/binutils/2.38-GCCcore-11.3.0/bin/ld: /p/software/jurecadc/stages/2023/software/netCDF/4.9.0-gompi-2022a/lib64/libnetcdf.so: undefined reference to symbol 'ncmpi_inq_dim' /p/software/jurecadc/stages/2023/software/binutils/2.38-GCCcore-11.3.0/bin/ld: /p/software/jurecadc/stages/2023/software/PnetCDF/1.12.3-gompi-2022a/lib64/libpnetcdf.so.4: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status Our FOSS should be the same as upstream, except we default to MKL. The `ncmpi_inq_dim` is from PnetCDF, which I added to the dependencies. If I don’t, I get the same undefined reference error anyway. Any hints? Dr. Alexandre Strube [email protected] Helmholtz AI Jülich Supercomputing Centre Forschungszentrum Juelich GmbH 52425 Jülich, Germany Phone: +49 2461 61-3866 JSC is the coordinator of the John von Neumann Institute for Computing (NIC) and member of the Gauss Centre for Supercomputing (GCS)
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