I don't see why an excessive algal growth model would fail to predict a 
large hypoxic zone around the mouth of the Mississippi.  In fact, the 
models apparently do predict it, though I can't say if they get the 
right answer for the wrong reason.  The Mississippi watershed is vast, 
and an enormous portion of that watershed is dedicated to intensive 
agriculture with heavy fertilizer use.  Also, the algae are presumably 
dispersed beyond where they grow and die, and the hypoxic water 
presumably disperses beyond where decomposition occurs, so the hypoxic 
zone need not be restricted to locations with enough nutrients to 
support algal blooms.

Given that the hypoxic zone is pretty much on the continental shelf and 
away from the Gulf's major currents (based on maps you cna find at 
http://oceancurrents.rsmas.miami.edu/caribbean/caribbean-cs.html and 
http://www.epa.gov/gmpo/nutrient/hypoxia_pressrelease.html), it seems 
plausible that the Gulf in the vicinity of the mouth of the Mississippi 
is stagnant enough to allow the hypoxic zone to grow quite large.

Regarding fish farms to solve the problem, I'm skeptical that they 
would work.  Fish farms usually add to nutrient loads because the 
operators feed the fish rather than counting on the river to bring 
enough food in.  Also, you mentioned keeping the fish in lakes 
connected to the river, I believe.  It seems to me that, every growing 
season, these lakes would sprout algal blooms, go hypoxic, and kill off 
the fish.  But then, I'm a terrestrial biologist.  I don't know quite 
enough about aquatic ecology to answer the original question 
satisfactorally, but I don't think I've yet heard of a miracle cure for 
everything that actually worked.

Jim

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