I’m posting a general question to those who know something about 
ecological statistics. As part of my masters thesis, I want to compare 
bird species richness and abundance of birds detected in transects in 
mature forests and mature forests experiencing low-density housing 
development (I’ve worked hard to select sites that make this comparison 
valid and I will be collecting data in a way that will allow me to assign 
probabilities of detection in both habitat types).

I have 12 forested transects and 12 residential transects. I will visit 
each site three times. I’m essentially searching for the appropriate 
statistical analysis to compare mean number of species/mean number of 
individuals/and mean diversity index values between the two habitat  
groups. I’m assuming that basic parametric tests such as t-test/one-way 
ANOVA would be appropriate, however my thesis committee challenged me to 
see if there aren’t better ways of comparing the data, particularly since 
there will be repeated visits to each transect.
Any help/thoughts/suggestions would be most welcome.

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