Derek Roff's book "Modeling Evolution: An Introduction to Numerical Methods" 
would likely be a good resource for anyone using R as a replacement for MatLab. 
 For most (all?) of its examples it contains code for both languages and has an 
appendix with information for translating between the two with a table 
comparing related/equivalent functions in the two languages.  It also contains 
a lot of info and code for doing calculus, simulation, and graphing.  While 
accessible it would probably be daunting if used as a ground-floor intro to R, 
coding, simulation, modeling etc. 

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