"Phylogenetic comparative methods for studying diversification and 
phenotypic evolution (PCME01)"

Full details can be found at the link below.

http://bit.ly/2FFjB6sPHYLOGENETIC_COMPARITIVE_METHODS_PHENOTYPIC_EVOLUTION

This course will run from the 22nd - 25th October 2018 in Glasgow City 
Centre and will be delivered by Dr. Antigoni Kaliontzopoulou.

Course Overview:
Phylogenetic comparative methods are commonly used nowadays to 
investigate how species diversification occurs and to test hypotheses 
about the mechanisms that drive phenotypic evolution, e.g. to model 
speciation and extinction, to understand why some groups are more 
diverse than others, to test whether phenotypic traits have evolved 
under neutral, directional or diversifying selection, to investigate how 
evolutionary rates are modified across the evolutionary history of a 
group etc. In all these cases, a phylogenetic hypothesis for the group 
of interest is combined to phenotypic and ecological data at the species 
level to understand the tempo and mode of evolutionary change.

The objective of this course is to provide an overview of these methods 
and of the tools avaipracticalsle for their implementation in the R 
statistical language. During theoretical sessions, we will review the 
main concepts and statistical tools necessary for testing hypotheses 
about species diversification and phenotypic evolution. These will then 
be implemented in practical practicals sessions through worked examples 
to provide the participants with hands-on experience on data management 
and the implementation of these methods to real biological data.

Monday 22nd
DAY 1: Introduction
9:00 'V 9:30: Introductions
9:30 'V 10:30: Why do we need PCMs? A short history of the field
11:00 'V 12:00: Testing for phylogenetic signal
13:00 'V 14:00: Ancestral character reconstruction
14:30 'V 17:30: PRACTICALS

Tuesday 23rd
DAY 2: Testing hypotheses on phenotypic evolution
9:00 'V 10:30: Phylogenetic independent contrasts and phylogenetic GLS
11:00 'V 12:30: Phylogenetically-informed ordination
14:30 'V 17:30: PRACTICALS

Wednesday 24th
DAY3: Tempo and mode of evolutionary change
9:00 'V 10:30: Evolutionary rates: estimation and tests
11:00 'V 12:30: Models of phenotypic evolution
14:30 'V 17:30: PRACTICALS

Thursday 25th
DAY 4: Miscellanea
9:00 'V 10:30: Modelling lineage diversification
11:00 'V 12:30: Future perspectives: multivariate extensions to PCMs
14:30 'V 17:30: PRACTICALS

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1.      March 19th – 23rd 2018
BEHAVIOURAL DATA ANALYSIS USING MAXIMUM LIKLIHOOD IN R (BDML01)
Glasgow, Scotland, Dr William Hoppitt
http://www.psstatistics.com/course/behavioural-data-analysis-using-maximum-
likelihood-bdml01/

2.      April 9th – 13th 2018 
NETWORK ANAYLSIS FOR ECOLOGISTS USING R (NTWA02
Glasgow, Scotland, Dr. Marco Scotti   
www.prstatistics.com/course/network-analysis-ecologists-ntwa02/

3.      April 16th – 20th 2018
INTRODUCTION TO STATISTICAL MODELLING FOR PSYCHOLOGISTS USING R (IPSY01)
Glasgow, Scotland, Dr. Dale Barr, Dr Luc Bussierre   
http://www.psstatistics.com/course/introduction-to-statistics-using-r-for-
psychologists-ipsy01/

4.      April 23rd – 27th 2018
MULTIVARIATE ANALYSIS OF ECOLOGICAL COMMUNITIES USING THE VEGAN PACKAGE 
(VGNR01)
Glasgow, Scotland, Dr. Peter Solymos, Dr. Guillaume Blanchet             
www.prstatistics.com/course/multivariate-analysis-of-ecological-communities-
in-r-with-the-vegan-package-vgnr01/

5.      April 30th – 4th May 2018
QUANTITATIVE GEOGRAPHIC ECOLOGY: MODELING GENOMES, NICHES, AND COMMUNITIES 
(QGER01)
Glasgow, Scotland, Dr. Dan Warren, Dr. Matt Fitzpatrick
www.prstatistics.com/course/quantitative-geographic-ecology-using-r-
modelling-genomes-niches-and-communities-qger01/

6.      May 7th – 11th 2018 ADVANCES IN MULTIVARIATE ANALYSIS OF SPATIAL 
ECOLOGICAL DATA USING R (MVSP02)
CANADA (QUEBEC), Prof. Pierre Legendre, Dr. Guillaume Blanchet
www.prstatistics.com/course/advances-in-spatial-analysis-of-multivariate-
ecological-data-theory-and-practice-mvsp03/
7.      May 14th - 18th 2018
INTRODUCTION TO MIXED (HIERARCHICAL) MODELS FOR BIOLOGISTS (IMBR01)
CANADA (QUEBEC), Prof Subhash Lele 
www.prstatistics.com/course/introduction-to-mixed-hierarchical-models-for-
biologists-using-r-imbr01/

8.      May 21st - 25th 2018
INTRODUCTION TO PYTHON FOR BIOLOGISTS (IPYB05)
SCENE, Scotland, Dr. Martin Jones
http://www.prinformatics.com/course/introduction-to-python-for-biologists-
ipyb05/

9.      May 21st - 25th 2018
INTRODUCTION TO REMOTE SENISNG AND GIS FOR ECOLOGICAL APPLICATIONS (IRMS01)
Glasgow, Scotland, Prof. Duccio Rocchini, Dr. Luca Delucchi
www.prinformatics.com/course/introduction-to-remote-sensing-and-gis-for-
ecological-applications-irms01/

10.     May 28th – 31st 2018
STABLE ISOTOPE MIXING MODELS USING SIAR, SIBER AND MIXSIAR (SIMM04)
CANADA (QUEBEC) Dr. Andrew Parnell, Dr. Andrew Jackson 
www.prstatistics.com/course/stable-isotope-mixing-models-using-r-simm04/

11.     May 28th – June 1st 2018
ADVANCED PYTHON FOR BIOLOGISTS (APYB02)
SCENE, Scotland, Dr. Martin Jones
www.prinformatics.com/course/advanced-python-biologists-apyb02/

12.     June 12th - 15th 2018
SPECIES DISTRIBUTION MODELLING (DBMR01)
Myuna Bay sport and recreation, Australia, Prof. Jane Elith, Dr. Gurutzeta 
Guillera
www.prstatistics.com/course/species-distribution-models-using-r-sdmr01/

13.     June 18th – 22nd 2018
STRUCTURAL EQUATION MODELLING FOR ECOLOGISTS AND EVOLUTIONARY BIOLOGISTS 
USING R (SEMR02)
Myuna Bay sport and recreation, Australia, Dr. Jon Lefcheck
www.prstatistics.com/course/structural-equation-modelling-for-ecologists-
and-evolutionary-biologists-semr02/

14.     June 25th – 29th 2018
SPECIES DISTRIBUTION/OCCUPANCY MODELLING USING R (OCCU01)
Glasgow, Scotland, Dr. Darryl McKenzie
www.prstatistics.com/course/species-distributionoccupancy-modelling-using-r-
occu01/

15.     July 2nd - 5th 2018
SOCIAL NETWORK ANALYSIS FOR BEHAVIOURAL SCIENTISTS USING R (SNAR01)
Glasgow, Scotland, Prof James Curley
http://www.psstatistics.com/course/social-network-analysis-for-behavioral-
scientists-snar01/

16.     July 8th – 12th 2018
MODEL BASE MULTIVARIATE ANALYSIS OF ABUNDANCE DATA USING R (MBMV02)
Glasgow, Scotland, Prof David Warton
www.prstatistics.com/course/model-base-multivariate-analysis-of-abundance-
data-using-r-mbmv02/

17.     July 16th – 20th 2018
PRECISION MEDICINE BIOINFORMATICS: FROM RAW GENOME AND TRANSCRIPTOME DATA 
TO CLINICAL INTERPRETATION (PMBI01)
Glasgow, Scotland, Dr Malachi Griffith, Dr. Obi Griffith
www.prinformatics.com/course/precision-medicine-bioinformatics-from-raw-
genome-and-transcriptome-data-to-clinical-interpretation-pmbi01/

18.     July 23rd – 27th 2018
EUKARYOTIC METABARCODING (EUKB01)
Glasgow, Scotland, Dr. Owen Wangensteen
http://www.prinformatics.com/course/eukaryotic-metabarcoding-eukb01/

19.     October 8th – 12th 2018
INTRODUCTION TO SPATIAL ANALYSIS OF ECOLOGICAL DATA USING R (ISAE01)
Glasgow, Scotland, Prof. Subhash Lele
https://www.prstatistics.com/course/introduction-to-spatial-analysis-of-
ecological-data-using-r-isae01/

20.     October 15th – 19th 2018
APPLIED BAYESIAN MODELLING FOR ECOLOGISTS AND EPIDEMIOLOGISTS (ABME
Glasgow, Scotland, Dr. Matt Denwood, Emma Howard
http://www.prstatistics.com/course/applied-bayesian-modelling-ecologists-
epidemiologists-abme04/

21.     October 29th – November 2nd 2018
PHYLOGENETIC COMPARATIVE METHODS FOR STUDYING DIVERSIFICATION AND 
PHENOTYPIC EVOLUTION (PCME01)
Glasgow, Scotland, Prof. Subhash Lele
Dr. Antigoni Kaliontzopoulou
https://www.prstatistics.com/course/phylogenetic-comparative-methods-for-
studying-diversification-and-phenotypic-evolution-pcme01/

22.     November 26th – 30th 2018
FUNCTIONAL ECOLOGY FROM ORGANISM TO ECOSYSTEM: THEORY AND COMPUTATION (FEER
Glasgow, Scotland, Dr. Francesco de Bello, Dr. Lars Götzenberger, Dr. 
Carlos Carmona
http://www.prstatistics.com/course/functional-ecology-from-organism-to-
ecosystem-theory-and-computation-feer01/

23.     February 2018 TBC
MOVEMENT ECOLOGY (MOVE02)
Margam Discovery Centre, Wales, Dr Luca Borger, Dr Ronny Wilson, Dr 
Jonathan Potts
www.prstatistics.com/course/movement-ecology-move01/

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