Hello.....I am wondering if there is a way to do this without
violating various assumptions about independence and variability. 

I have run subjects in two versions of an experiment, with partially
overlapping conditions. In each, 30 subjects participated in all
conditions (fully crossed within design).

version 1               version 2
a
b
c                       c
d                       d
                        e
                        f


So in total, cell sizes are:

a-30
b-30
c-60
d-60
e-30
f-30

Besides the fact that a and b are more independent of e and f than a,
b, c, and d (or c, d, e, and f) are from each other, since different
subjects participated in 1 and 2, the resulting cell sizes are
different.  

How would the result be in error in simply finding a mean for a, b, c,
d, e, and f and performing an ANOVA on these, assuming they can be
viewed as levels of a factor?

Thanks
Jim


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