On 16 Oct 2003 09:01:36 -0700, [EMAIL PROTECTED] (Enda Kelly)
wrote:

> Hi. I have a query regarding whether it is logical to place a confidence
> interval about a P-value. The computation involved uses a permutation
> method to produce a P-value for a hypothesis test. In an effort to check
> the reliability of this P-value I have been bootstrapping the raw data
> to produce a confidence interval about this P-value. Curiously, for
> significant P-values the CI is in general quite narrow, whereas for
> non-significant values, I get enormous CIs. 

You are observing 'proportions'.  
The simple SD (ignoring N)  for a proportion 
is  sqrt(p *(1-p) ) ; so the SD  for 0.50  is 0.50 .
By that formula, the SD  for   0.0001  is 0.01.  
In bootstrapping, of course, you would get CI  limits
that would not be symmetrical at the extremes.

 
>                        This leads me to the
> suspicion that there is something flawed about the process. Am I correct
> in my suspicions?

Permutations are used to get *exact*, counted  limits.
Actual  "bootstrapping" has been used to approximate
those numbers.  There are proper was to talk about doing
those things.  So, I am not entirely happy with your
use of the terminology, and I  *suspect*  that you are 
misinterpreting the natural, expected  sort of results.
But I can't be sure of that.

-- 
Rich Ulrich, [EMAIL PROTECTED]
http://www.pitt.edu/~wpilib/index.html
"Taxes are the price we pay for civilization." 
.
.
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