Hi Daniel, 

> Do you know if you have to run a command in the terminal to create certs 
> when you're trying to enable on-demand certificates for a self-paced 
> "honor" course.?
>
> if you are using web certificates, you don't.
 

> Another issue I've found is that these instructions indicate 
> <http://edx.readthedocs.io/projects/edx-partner-course-staff/en/latest/student_progress/checking_student_progress.html#allow-learners-to-request-certificates>
>  
> a "Certificates" menu option should appear on the instructor admin page, 
> yet I don't see it when logged into the course dashboard as my superuser.
>
That tab should appear in the instructor dashboard if you are a superuser
make sure your configuration includes these features:
"CERTIFICATES_INSTRUCTOR_GENERATION": true, 
"ENABLE_INSTRUCTOR_BACKGROUND_TASKS": true
 
hope that helps out.

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