A follow up on my own post as it might be helpful for others,

I found out that a firewall in the middle was dropping open connections 
with x amount of time of inactivity.
ES wasn't really happy with this apparently.

Solution:

set network.tcp.keep_alive true

Add following params to sysctl.conf:

net.ipv4.tcp_keepalive_time = 60
net.ipv4.tcp_keepalive_probes = 6
net.ipv4.tcp_keepalive_intvl = 10

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