Strange, I just downloaded the latest Kibana, and I created 2 simple 
logstash indexes, logstash-2014.01.29 and a_logstash-2014.01.29. Then I 
went into Kibana with a new dashboard and set the index timestampping to 
day and pattern to [a_logstash-]YYYY.MM.DD,[logstash-]YYYY.MM.DD

My histogram shows some data and when I inspect the query, it says:

curl -XGET 
'http://localhost:9200/logstash-2014.01.29,a_logstash-2014.01.29/_search?pretty'
 -d '{...}'


I'm curious, which version of Kibana are you using?

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