Hi Matt, I'm not sure what the solution is for your system, but here's my configuration:
org-file-apps is a variable defined in `org.el'. Its value is ((auto-mode . emacs) ("\\.mm\\'" . default) ("\\.x?html?\\'" . default) ("\\.pdf\\'" . default)) I'm on Ubuntu Trusty on this system, and /etc/mailcap is a large file containing many specific references to opendocument filetypes, etc. When I export to ODT with "C-c C-e o O", the resulting file opens in LibreOffice. Hope this helps.