Thanks for the bug report, I can confirm this is happening.

I encountered a similar bug where org-agenda-prepare-buffers was causing the same issue when the file hadn't been saved to disk, and I agree that the solution looks good. I've formatted this into a patch and attached it. Might be worth considering too if this is happening anywhere else too, since this is the second time it has come up.

On 5/11/21 6:07 AM, m...@kisaragi-hiu.com wrote:
* Reproduction

1. emacs -Q
2. C-x C-f /tmp/new.org RET
3. Type anything
4. Type C-u C-c # (C-u org-update-statistics-cookies) to try to update all 
statistics cookies in the buffer
5. Notice the "Non-existent agenda file /tmp/new.org." error.

This doesn't happen if the file already exists.

I first saw this reported in this reddit thread: 
https://www.reddit.com/r/orgmode/comments/n9g1yf/is_this_a_bug_with_orgupdatestatisticcookies/
 (u/flyin1501 is me)

* Expectation

All statistics cookies in the buffer are updated no matter if the buffer's 
associated file is already created or not.

* Why this is happening

- `org-update-statistics-cookies` (C-c #) uses `org-map-entries` to update all 
cookies.
- `org-map-entries` uses `org-agenda-prepare-buffers` to prepare the file when 
SCOPE is nil. Excerpt:

         (if (not scope)
             (progn
               (org-agenda-prepare-buffers
                (and buffer-file-name (list buffer-file-name)))
               (setq res
                     (org-scan-tags
                      func matcher org--matcher-tags-todo-only start-level)))

- This function complains if the file does not exist, causing the error.

* Solution (IMO)

`org-map-entries` is quite complex because of its matching and scoping 
features; `org-update-statistics-cookies` only updates the current buffer and 
should use `org-map-region` instead. IMO it should go from

     (if all
         (progn
           (org-update-checkbox-count 'all)
           (org-map-entries 'org-update-parent-todo-statistics))

to:

     (if all
         (progn
           (org-update-checkbox-count 'all)
           (org-map-region 'org-update-parent-todo-statistics (point-min) 
(point-max)))

>From 2081a1d2bd628dd8e5a1ad9fc4ffd58a4f951972 Mon Sep 17 00:00:00 2001
From: Nicholas Savage <n...@nicksavage.ca>
Date: Tue, 11 May 2021 06:59:14 -0400
Subject: [PATCH] lisp/org.el: Fix org-update-statistics-cookies error

* lisp/org.el (org-update-statistics-cookies): Replace
usage of `org-map-entries' with `org-map-region' to prevent bug where
an error was thrown if the current buffer had not yet been saved to disk.

Formatted from a patch proposal by m...@kisaragi-hiu.com
Reported-by: m...@kisaragi-hiu.com
---
 lisp/org.el | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lisp/org.el b/lisp/org.el
index 6dbf33abc..fc5197642 100644
--- a/lisp/org.el
+++ b/lisp/org.el
@@ -9989,7 +9989,7 @@ all statistics cookies in the buffer."
   (if all
       (progn
 	(org-update-checkbox-count 'all)
-	(org-map-entries 'org-update-parent-todo-statistics))
+	(org-map-region 'org-update-parent-todo-statistics (point-min) (point-max)))
     (if (not (org-at-heading-p))
 	(org-update-checkbox-count)
       (let ((pos (point-marker))
-- 
2.20.1

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