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The idea is I want to be able to see the inline PNG image of my graph while writing, and when I export I'll point the latex exporter to the PDF. This provides a vector format for Latex, instead of a low resolution bitmap. Yes you can use PDF's as includes, and they look great because they are a vector format.
I have this exact same issue. One idea I haven't explored, but that might be possible, is to generate PDFs in org-babel, and then display the pdf using emacs doc-view, which converts to png for display in an emacs buffer, if I understand correctly.
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