Johannes Rainer <johannes.rai...@gmail.com> writes: > dear all, > > I have some computation intense R-code that I want to run remotely on my > server, > and, according to the org manual that should be possible with the ":dir" > parameter. so I went on and tried the following (user/server masked): > > #+BEGIN_SRC R :dir /xx@xxx: > system("hostname") > #+END_SRC > > when I execute it I get the error: > > Tramp: Encoding region using function `base64-encode-region'...done > Tramp: Decoding region into remote file > /ssh:xx@xxx:/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/R-46345BQs...done > byte-code: Couldn't write region to > `/ssh:xx@xxx:/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/R-46345BQs', > decode using `base64 -d -i >%s' failed > > apparently, this temp folder does not exist on the linux server, it is > actually > the temp folder from my local machine. > > I get the same error when I try to execute remote shell code, so it's not R > related. > > I also tried to start a ssh session using "M-x ssh" and used the source block > > #+BEGIN_SRC R :exports both :session *ssh xxx* > system("hostname") > #+END_SRC > > on the server it executes the command but it can not write the results: > >> xxx >> Warning message: > In file.rename(tfile, transfer.file) : > cannot rename file '/tmp/RtmpsirjGl/file51c8f6ce4ec' to > '/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/babel-46345zSH/R-46345a4N', > reason 'No such file or directory' >> > > I am using emacs 24.3 and Org-mode version 8.0.7 (release_8.0.7-384-g6fdc23) > > I would be helpful for any suggestions how I could solve this problem. > > thanks in advance
The following works for me: #+BEGIN_SRC R :results output :dir /xxx@xxxxx: system("hostname") #+END_SRC with Emacs 24.2.1 and 8.0.7 (8.0.7-6-g13cb28-elpaplus) Cheers, Loris -- This signature is currently under construction.