I have a BLAST alignment: query sequence and database sequence. The alignment is only showing the HSP from the blast output as expected, however I want to build an alignment of the entire database sequence against my query sequence.
I tried using needle from EMBOSS, however its aligning the sequences completely different than BLAST does. What I'd really like is a way to anchor the alignment based on the BLAST HSP. Does anyone know how to do this, or what tool(s) will allow me to do this? Ryan _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
