Hi Sorry for asking this but dbiflat is dying on me with the refseq nucleotides
I am using dbiflat -dbname RefSeqN -idformat refseq -directory . -filenames "*.gbff" -release 17.0 -date 14/06/06 -fields "acnum,seqvn,des,keyword,taxon" and I get Warning: Duplicate ID skipped: 'XM_757618' All hits will point to first ID found Warning: Duplicate ID skipped: 'XM_757619' All hits will point to first ID found Warning: Duplicate ID skipped: 'XM_757620' All hits will point to first ID found EMBOSS An error in embdbi.c at line 1238: Error in embDbiSortWriteFields, expected entry NM_001004399 not found I know its probably something simple, but for the life of me I cant see it............. Any suggestions? Regards Aengus -- ----------------------------------------------------------------------- Aengus Stewart Group Leader Bioinformatics and BioStatistics Tel: +44 (0)20 7269 3679 Cancer Research UK, Lincoln's Inn Fields, Holborn, London, WC2A 3PX, UK ----------------------------------------------------------------------- This electronic message contains information which may be privileged and confidential. The information is intended to be for the use of the individual(s) or entity named above. Be aware that any third party disclosure, distribution, copying or use of this communication, without prior permission, is strictly prohibited. _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
