Hi, I try to make indexes for the release 87 of EMBL with new first line format:
* I downloaded EMBOSS-3.0.0 * gunzip, tar xvf ... * I replaced the files with the files in the fixes directory * ./configure --prefix= .... ,make, make install * I indexed my rel_std_*.dat files (db name: embl) with dbiflat * I wrote a emboss.default file for embl db (showdb works) but when I try the seqret application I obtained this output: >.1; .1; Human cytomegalovirus strain AD169 complete genome gggccgcgtggtgggtcctcgaggggcgggggggtgtttttagcgggggggtgaaacttg gagttgcgtgtgtggacggcgactagttgcgtgtggtgcggaggacggcgacggcgaata aaagcgacgtgcggcgcgcacggcgaaaagaagacgcgtgtctgtgtctgtgtgattccc ... I tried to index these new files with EMBLNEW format (in place of EMBL) as specified in the README file in the fixes directory but it is not a valid format. Does anyone index the new format EMBL flat file successfully? Thank you for the help Olivier -- Olivier Friard Laboratorio di Biologia Computazionale - Facoltà di Scienze MFN Università di Torino via Accademia Albertina 13, 10124 TORINO (Italy) tel. +39 011 6704689 http://www.personalweb.unito.it/olivier.friard/ _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
