+----[ Deborah Weisman <[EMAIL PROTECTED]> (25.Jul.2006 12:53): | | Starting with Phylip, since the docs claim that Phylip also should | install without problems: | Since emboss is installed into /usr/local , I did: | | ./configure --prefix=/usr/local --enable-localforce | | and then make gives: | | clique.c: In function `emboss_getoptions': | clique.c:160: error: void value not ignored as it ought to be | make: *** [all-recursive] Error 1 | | I downloaded the current version of phylip, without emboss additions, | from : | ftp://evolution.genetics.washington.edu/pub/phylip/phylip-3.65.tar.gz | and it compiles and runs with no problems. | | Do you have any suggestions as to what I should be looking at? | +----]
Deborah, I've had the same problem building the old phylip against emboss-4.0.0, however the one that's called PHYLIPNEW (3.6b) compiles fine. I've compiled all embassy apps without problem against emboss 4.0.0 on FreeBSD-6.1. Following is the list of embassy apps with the versions I've used. If in doubt re-download the distfile, as sometimes they are re-rolled with a new version of emboss without changing their version ... below is the MD5 checksum and size of the files that are working for me. Cheers, fernan MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 5893d3e5f101783050cbbc44766fe7d8 SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 405474 MD5 (emboss/EMNU-1.05.tar.gz) = 3ef6e2ac28f55b167b7f2f3614015618 SIZE (emboss/EMNU-1.05.tar.gz) = 377734 MD5 (emboss/ESIM4-1.0.0.tar.gz) = 35b0f661043bd9c03aaba22f7bffc321 SIZE (emboss/ESIM4-1.0.0.tar.gz) = 417724 MD5 (emboss/HMMER-2.3.2.tar.gz) = 967454c708ecaa0cbd47deda66b78e65 SIZE (emboss/HMMER-2.3.2.tar.gz) = 546870 MD5 (emboss/MEMENEW-0.1.0.tar.gz) = 46b6ca9eeba6c63bd08ebe1b661434dc SIZE (emboss/MEMENEW-0.1.0.tar.gz) = 423254 MD5 (emboss/MSE-1.0.0.tar.gz) = b5f3f4ed1e74c6cf7a7d57d398a7634b SIZE (emboss/MSE-1.0.0.tar.gz) = 428940 MD5 (emboss/PHYLIPNEW-3.6b.tar.gz) = 3a12ee43c48562092f4f2add0e8f2978 SIZE (emboss/PHYLIPNEW-3.6b.tar.gz) = 1532866 MD5 (emboss/TOPO-1.0.0.tar.gz) = 538c5205fc65ff3b0f3b83dde466200f SIZE (emboss/TOPO-1.0.0.tar.gz) = 367882 MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = 38ab9e0a0158cf923668d0e863606b54 SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 440714 MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = d214f124dd2806aa2eb163682dc7be7f SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 452839 MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 64eae2537e7c887f5af2275ac3f1d2fa SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 549405 MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 93e7bb7fbd53d8aa2e1ab0d1af4f44c4 SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 514336 MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 7536331836127104c3dac6941118cbac SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 343762 MD5 (emboss/VIENNA-1.6.tar.gz) = 66087ecae4775e9c9928980f7976deee SIZE (emboss/VIENNA-1.6.tar.gz) = 590827 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
