I'm trying to figure out what the appropriate table for calculating the CAIs of fission yeast sequences.
The documentation says, "The default codon usage table 'Eyeastcai.cut' was prepared from a set of S. pombe genes by Peter Rice." If you copy the example in the documentation (that uses a fission yeast gene with the Eyeastcai.cut table), you get the same results that they show. However, if you look at the index of tables in EMBOSS's data directory, it says that Eyeast_cai.cut is the "Saccharomyces_cerevisiae original CAI set (Eyeastcai.cut)". The table that is identified as being fission yeast gives very different numbers. Any clarification would be greatly appreciated! Thanks, Aidan Findlater _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
