Hello everyone - I am using showfeat to display blast similarity features that are stored in a gff file. From the documentation, it looks like showfeat can display multiple exon features on the same line but can it also do this with similarity features? Here is an example from my gff file:
Chr5:4535154,4542653 BLAST similarity 2475 5120 . . . Target "ref|XP_468448.1|" Chr5:4535154,4542653 BLAST similarity 3142 3480 388 + . Target "ref|XP_468448.1|" 141 225 Chr5:4535154,4542653 BLAST similarity 4944 5120 304 + . Target "ref|XP_468448.1|" 248 306 Chr5:4535154,4542653 BLAST similarity 2475 2603 216 + . Target "ref|XP_468448.1|" 66 108 Chr5:4535154,4542653 BLAST similarity 2916 3017 182 + . Target "ref|XP_468448.1|" 107 140 Also, is there an emboss program that does showfeat's functions but with a graphical, publication quality output? I am thinking of a graphic with colored feature tracks, etc. Thanks Mike _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
