Hi folks, fuzznuc and also fuzzpro are ignoring the start and end params I am giving it.
fuzznuc -pattern rccatgg -sbegin1 75834 -send1 96013 -sequence ac087388.fasta Cheers Aengus ######################################## # Program: fuzznuc # Rundate: Mon Oct 23 2006 18:54:54 # Commandline: fuzznuc # -pattern rccatgg # -sbegin 75834 # -send 96013 # -sequence ac087388.fasta # Report_format: seqtable # Report_file: ac087388.fuzznuc ######################################## #======================================= # # Sequence: AC087388 from: 75834 to: 96013 # HitCount: 15 # # Pattern_name Mismatch Pattern # pattern1 0 rccatgg # # Complement: No # #======================================= Start End Pattern_name Mismatch Sequence 38702 38708 pattern1 . gccatgg 43834 43840 pattern1 . accatgg 47457 47463 pattern1 . gccatgg 48659 48665 pattern1 . gccatgg 56718 56724 pattern1 . accatgg 61200 61206 pattern1 . accatgg 62151 62157 pattern1 . accatgg 68706 68712 pattern1 . accatgg 78513 78519 pattern1 . gccatgg 79973 79979 pattern1 . gccatgg 86415 86421 pattern1 . accatgg 97451 97457 pattern1 . accatgg 102803 102809 pattern1 . gccatgg 113924 113930 pattern1 . gccatgg 115436 115442 pattern1 . gccatgg #--------------------------------------- #--------------------------------------- #--------------------------------------- # Total_sequences: 1 # Total_hitcount: 15 #--------------------------------------- -- ----------------------------------------------------------------------- Aengus Stewart Group Leader Bioinformatics and BioStatistics Tel: +44 (0)20 7269 3679 Cancer Research UK, Lincoln's Inn Fields, Holborn, London, WC2A 3PX, UK ----------------------------------------------------------------------- This electronic message contains information which may be privileged and confidential. The information is intended to be for the use of the individual(s) or entity named above. Be aware that any third party disclosure, distribution, copying or use of this communication, without prior permission, is strictly prohibited. _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
