Hello - I'm trying to use tranalign to align DNA sequences but it keeps throwing errors. I tested it on the example input files from the documentation web pages and those work fine.
here's an example session with the errors: tranalign fasta::stm1likedna.fasta fasta::stm1_prot_aln.fasta Align nucleic coding regions given the aligned proteins nucleotide output sequence set [ss1g01814.fasta]: Error: Guide protein sequence SS1G01814 not found in nucleic sequence SS1G01814 <snip> it throws the same error for every pair of proteins in the file here are the sequence names in the files. I can supply the full files if anyone thinks they can help. thanks in advance... Mike [EMAIL PROTECTED] phylo]$ grep '>' stm1likedna.fasta >SS1G01814 >SS1G03605 >SS1G07709 >SS1G11564 >BC1G02874 >BC1G08371 >BC1G15724 [EMAIL PROTECTED] phylo]$ grep '>' stm1_prot_aln.fasta >SS1G01814 >SS1G03605 >SS1G07709 >SS1G11564 >BC1G02874 >BC1G08371 >BC1G15724 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
