Hi Alan, > The appended definitions are simple ones that may be > useful if you only want a few sequences at a time. > If sites upgrade to SRS8 then alter accordingly. > > Alan > > DB embl [ type: N method: srswww format: embl release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > comment: "EMBL from the EBI" ] > > DB em [ type: N method: srswww format: embl release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > dbalias: "EMBL" > comment: "EMBL from the EBI" ] > > DB swissprot [ type: P method: srswww format: swiss release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > comment: "SWISSPROT from the EBI" ] > > DB sw [ type: P method: srswww format: swiss release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > dbalias: "SWISSPROT" > comment: "SWISSPROT from the EBI" ] > > DB uniprot [ type: P method: srswww format: swiss release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > comment: "UNIPROT from the EBI" ] > > DB uni [ type: P method: srswww format: swiss release: EBI > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > dbalias: "UNIPROT" > comment: "UNIPROT from the EBI" ] > > DB pir [ type: P method: srswww format: nbrf release: "EBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > comment: "PIR from the EBI" ] > > DB genbank [ type: N method: srswww format: genbank release: "NCBI" > url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"; > comment: "GenBank from Infobiogen" ] > > DB gb [ type: N method: srswww format: genbank release: "NCBI" > url: "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz"; > dbalias: "GENBANK" > comment: "GenBank from Infobiogen" ] > > DB refseq [ type: N method: srswww format: genbank release: "NCBI" > url: "http://srs.ebi.ac.uk/srs7bin/cgi-bin/wgetz"; > comment: "REFSEQ from EBI" ]
For the EBI's SRS server please use: http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz as the URL. This should allow for continued support when the server is upgraded. Also note that the Infobiogen SRS service is no longer available. For other SRS sites carrying GenBank please see the Public SRS Server List (http://downloads.biowisdomsrs.com/publicsrs.html). Hamish _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
