Hi Jean, > Now that I know the reason why patmatmotifs can't find HTH in my > hair_drome > input sequence, I would like to know what program in EMBOSS package CAN > find > it in my sequence. I tried helixturnhelix but still it couldn't find it. > Does helixturnhelix using matrix or motif? looks like matrix to me in the > documentation. Please advise.
helixturnhelix uses a matrix, but it is quite an old one from the days when there were only about 20 HTH examples (and 2 of them were wrong). We will look at ways to use the prosite matrix entries. regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
