Hi, I know I can give a pattern like 'ACCGGT' and search against a file which contains multiple sequences. Is there a way I can specify a 'pattern file' which contains multiple patterns that I want to search for instead of just one pattern each time? For example, I have a fileA which contains multiple DNA sequences. I want to create a fileB which contains 20 patterns that I want to seach each of them against the sequences in the fileA. We are in the transition from GCG to EMBOSS. And the program 'findpatterns' in GCG can do this. But I couldn't find corresponding emboss program that does the same thing.
Thank you in advance. Jean Mao Helix Staff CIT, NIH _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
