Andres Pinzon wrote: > Hi, > Im trying fuzznuc to search for some patterns in a a genome. > > ...But when I search the complementary strand: > > It reports a pattern on complement that exists, in fact, but on the > forward strand not in complement. > > Am I doing something wrong?
I think this is one we patched soon after the 4.0.0 release. There are patches on our FTP server, and a new 4.1.0 release will appear soon with this fix included. > What options do I have to use in order to make fuzznuc to report the > occurrences of "pattern" on both: reverse and complementary strand? -complement is correct. It searched both strands. To search only the complementary strand, use the general EMBOSS option -sreverse and do not specify -complement Hope this helps, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
