Hi, Im trying to get all the "/translation" sequences from a genome embl feature file. I mean, each CD have a translation tag and I need those translations in a fasta file. I've tried all possible combinations of -type -tag but i can not get the translated sequences, but the DNA sequences.
This is the (basic) command I run: ================= extractfeat -sequence xoo-maff.embl -type CDS -outseq myseq -tag translation ================ Is it possible to get this translated sequences from the feature file? Or do I have to get the corresponding CDS DNA sequences and then translate them? Thanks in advance. -- Andrés Pinzón cPh.D. http://groups.google.com/group/Bioinformatica_es Bioinformatics Center, Colombia EMBnet node http://bioinf.ibun.unal.edu.co Tel +57 3165000 ext 16961 Fax +571 3165415 Micology and Phytopathology Laboratory - Los Andes University. Tel +571 3394949 ext. 2768 _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
