Hello all, I am having issues compiling the water and needle programs from the EMBOSS package. 1. I configured the package with --with-gccprofiling option which ensured that all the CFLAGS and LDFLAGS are set with -pg option. -bash-3.00$ ./water Smith-Waterman local alignment. Input sequence: ../../ncbi/build/myquery.txt Second sequence(s): ../../ncbi/build/ecoli.nt Gap opening penalty [10.0]: Gap extension penalty [0.5]: Output alignment [test1.water]: 2. the gmon.out file is created, however I get the foll. message -bash-3.00$ gprof water gmon.out > gprof_water_ecoli01.txt gprof: water: not in a.out format
has anyone had this problem?? Thanks in advance, Vivek _______________________________________________ EMBOSS mailing list [EMAIL PROTECTED] http://lists.open-bio.org/mailman/listinfo/emboss
