Hello, all,
I have a replicable segmentation fault problem.
If I run the following command;
fneighbor -datafile tinytest.dat -replicates y -outfile filefrom.fnb
using a tinytest.dat file containing;
3
1187Aquife 0.000000 0.368385 0.404489
BB213b06 0.368385 0.000000 0.151182
BB269b06 0.404489 0.151182 0.000000
then everything works.
If, however, my tinytest.phy contains two similarity matricies (or, for
that matter, the one hundred bootstrap replicates written by fdnadist by
default), like this;
3
1187Aquife 0.000000 0.368385 0.404489
BB213b06 0.368385 0.000000 0.151182
BB269b06 0.404489 0.151182 0.000000
3
1187Aquife 0.000000 0.368385 0.404489
BB213b06 0.368385 0.000000 0.151182
BB269b06 0.404489 0.151182 0.000000
then fdnadist returns;
<quote>
Phylogenies from distance matrix by N-J or UPGMA method
Segmentation fault
<endquote>
The fault remains regardless of the "-replicates" setting.
I am not familiar with the Emboss program; I am attempting to translate a
Phylip algorhythm. It is possible that I am simply misusing fdnadist.
I downloaded this through the Gentoo Linux distribution, so I've
cross-posted the query on the Gentoo forums at
http://forums.gentoo.org/viewtopic-p-4080556.html#4080556. I'll also
cross-post the fix.
Thank you for your time.
Regards,
H. Jenkins
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