[EMAIL PROTECTED] wrote: > Hi Nicolas, > > seqmatchall expects as input a "seqset". This means that all sequences > must be in one file.
> [EMAIL PROTECTED] schrieb am 01/06/2007 10:28:07: >> I do this >> % seqmatchall >> All-against-all comparison of a set of sequences >> Input sequence set: rtt109_h_puta* >> Segmentation fault (core dumped) The rtt109_h_puta* syntax is correct - seqmatchall will read all files that match the wildcard. "seqset" means that all sequences are loaded into memory. It is used for all-against-all comparisons and multiple alignment. The alternative, "seqall", means that sequences are read one at a time. This is used for analysing each sequence in a dataset, searching databases, and other algorithms where we do not need all the sequences at the same time. Hope that helps, Peter Rice _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
