Peter Rice wrote: > Niels Larsen wrote: >> Have I overlooked a way to switch fasta output to sequence-as >> -single-line mode? I think it allowed by fasta format, and >> if I/we were to build a processing pipe with sequence flowing, >> then I imagine that would be useful both for speed and I/O >> simplicity .. > > -ossingle
Oops. I misread your request as "single file mode". If you want the sequence all on one line after the header that can be done, but would need a new format name... or more than one new name if you want to allow more than one style of ID. Human chromosome 1 would have a very long line in the file. In C I am not sure it helps with speed for long sequences ... EMBL format is (or will be in 5.0.0) much faster for these as it includes the sequence length and avoids a lot of string copying. regards, Peter _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
