I would like to extract a primary sequence from a local "new" pdb file that is a model based on a swissprot/uniprot sequence. I would like to be able to assess the completeness of the model. Is there an EMBOSS program that will do this?
Thanks, Richard Rothery ############################################### CIHR Molecular Biology of Membrane Proteins Group, Department of Biochemistry, University of Alberta, Edmonton T6G 2H7 Ph. (780) 492-2229 Fax. (780) 492-0886 ############################################### -----Original Message----- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Guido N. Vacano Sent: Wednesday, July 18, 2007 11:32 AM To: EMBOSS Mailing List Subject: [EMBOSS] JASPAR Hello-- What would be involved in using the JASPAR database (http://jaspar.genereg.net/) with EMBOSS? The TRANSFAC database is not available for download (not without paying a hefty fee anyway), which limits the utility of the tfscan program. Thanks, Guido Vacano _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
