Thanks Tu, I'm having trouble with GCG databases made from EMBL-format data - have you also got it to work with them?
Neither dbigcg nor dbxgcg produce errors when applied to GCG 11 db files, but dbxgcg produces .pxac and .pxid files with Count = 0. dbigcg seems to work but then seqret returns a 'seqGcgReadSeq bad ID line'. It works ok for GCG 10 format dbs. regards, John -----Original Message----- From: Zheng Jin Tu [mailto:[EMAIL PROTECTED] Sent: 05 November 2007 16:54 To: john walshaw (JIC) Cc: [EMAIL PROTECTED] Subject: Re: [EMBOSS] dbigcg/dbxgcg and GCG 11 I am using dbigcg for indexing gcgdb for emboss use setenv GCGDB /usr/local/db/gcgdb/current dbigcg -idformat genbank -directory $GCGDB/gcggenbank -filename '*.seq' \ -dbname genbank -release 160 -date 09/01/07 -outfile gb_dbigcg.log & Thanks, TU ---------------------------------------------------- On Mon, 5 Nov 2007, john walshaw (JIC) wrote: > > Hello, > > am I right in thinking that dbigcg and dbxgcg don't support GCG 11 > database formats? > > best wishes, > > Dr John Walshaw > Department of Computational & Systems Biology > John Innes Centre > Norwich Research Park, Colney, Norwich NR4 7UH, UK > > > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > -- _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
