Hi, I'd like to run iep on a sequence and use either pir or osformat gifasta. The following gives an error (using emboss 5.0.0 on Debian):
iep -filter -osformat gifasta -sequence seq.txt This returns "Died: Unknown qualifier -osformat" iep -filter -sformat pir seq.txt or iep -sformat pir -sequence seq.txt also give an error: "Died: iep terminated: Bad value for '-sequence' with -auto defined" (with or without the sequence flag) However, iep -sformat fasta seq.txt works. What am I doing wrong? I'd like output to contain the accession number. I thought -osformat gifasta was for this purpose. My FastA definition line is e.g. >ENSG00000205090|1|protein_coding. The IEP report would me more useful if it contains the ENSG number instead of "protein coding or the entire definition line. How to do this? Kind regards, Bernd _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
