Hi, You should upgrade to EMBOSS 5.0.0. Make sure you apply the patch in the pub/EMBOSS/fixes/patches/ directory before configuring. Both 5.0.0 and the patch contain indexing fixes.
HTH Alan > Hello, and happy 2008. > > When I index the embl database with dbxflat, a segmentation fault occurs: > > $ dbxflat -dbname embl -dbresource embl -idformat EMBL -filenames > "*.dat" -directory . -fields id,acc -release 93.0 -date 08/01/08 > Database b+tree indexing for flat file databases > Processing file ./rel_ann_env_01_r93.dat > ... > Processing file ./wgs_aahc_inv.dat > Segmentation fault > > The "embl" database is defined in emboss.default, also the "embl" > resource with default values. The embl release is 93, and the > segmentation fault seems to happen in the file wgs_aahc_inv.dat. I > downloaded it again, it seems ok, but still same error happens. > > When I index only that file, i.e dbxflat -filenames "wgs_aahc_inv.dat" > etc etc, it works ok. > > What could be the problem? > > I have emboss 4.1 on linux on IA64 with enough disk space. > > Thank you very much! > > -- > Hernández Alvarez Alfredo José > Unidad de Administración de Tecnologías de Información > Licenciatura en Ciencias Genómicas > Centro de Ciencias Genómicas UNAM > Ext. 38221 Red UNAM / Tel. (01) 777 3290821 > [EMAIL PROTECTED] / [EMAIL PROTECTED] > _______________________________________________ > EMBOSS mailing list > [email protected] > http://lists.open-bio.org/mailman/listinfo/emboss > _______________________________________________ EMBOSS mailing list [email protected] http://lists.open-bio.org/mailman/listinfo/emboss
